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View Structure Prediction Details

Protein: gi|18410766, gi|...
Organism: Arabidopsis thaliana
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410766, gi|....

Description E-value Query
Range
Subject
Range
gi|92895786 - gi|92895786|gb|ABE92847.1| Protein prenyltransferase, alpha subunit [Medicago truncatula]
385.0 [0..2] [318..4]
gi|79331243, gi|... - gi|9758366|dbj|BAB08867.1| unnamed protein product [Arabidopsis thaliana], gi|79331243|ref|NP_001032...
372.0 [0..1] [310..1]
gi|90265145, gi|... - gi|90265145|emb|CAC09513.2| H0711G06.19 [Oryza sativa (indica cultivar-group)], gi|116310756|emb|CAH...
337.0 [0..39] [322..66]
tag - tag possible 3-methyladenine DNA glycosylase I 1177191:1177847 reverse MW:24145
333.0 [0..107] [323..1]
gi|77867583, gi|... - gi|77953611|ref|ZP_00818018.1| DNA-3-methyladenine glycosylase I [Marinobacter aquaeolei VT8], gi|77...
329.0 [0..114] [309..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSKLRSP VKPIDESRAI LCSTGNRFKV TKTEMTKKPQ LNPRVTKSPA TKKPDSNFSV  60
   61 STDDSSSSSS SSERSSVNTT NSGKVTTPSK RNGVEKLNNV VASVAVVEDI SPKIPGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [118-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKRCHWITPN SDPIYVLFHD EEWGVPVRDD KKLFELLVFS QALAEFSWPS ILRRRDDFRK  60
   61 LFEEFDPSAI AQFTEKRLMS LRVNGCLILS EQKLRAIVEN AKSVLKVKQE FGSFSNYCWR 120
  121 FVNHKPLRNG YRYGRQVPVK SPKAEYISKD MMQRGFRCVG PTVMYSFLQA SGIVNDHLTA 180
  181 CFRYQECNVE TERETKSHET ETKLDLHSPL LV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.69897
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle