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View Structure Prediction Details

Protein: gi|18410766, gi|...
Organism: Arabidopsis thaliana
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410766, gi|....

Description E-value Query
Range
Subject
Range
gi|92895786 - gi|92895786|gb|ABE92847.1| Protein prenyltransferase, alpha subunit [Medicago truncatula]
385.0 [0..2] [318..4]
gi|79331243, gi|... - gi|9758366|dbj|BAB08867.1| unnamed protein product [Arabidopsis thaliana], gi|79331243|ref|NP_001032...
372.0 [0..1] [310..1]
gi|90265145, gi|... - gi|90265145|emb|CAC09513.2| H0711G06.19 [Oryza sativa (indica cultivar-group)], gi|116310756|emb|CAH...
337.0 [0..39] [322..66]
tag - tag possible 3-methyladenine DNA glycosylase I 1177191:1177847 reverse MW:24145
333.0 [0..107] [323..1]
gi|77867583, gi|... - gi|77953611|ref|ZP_00818018.1| DNA-3-methyladenine glycosylase I [Marinobacter aquaeolei VT8], gi|77...
329.0 [0..114] [309..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSKLRSP VKPIDESRAI LCSTGNRFKV TKTEMTKKPQ LNPRVTKSPA TKKPDSNFSV  60
   61 STDDSSSSSS SSERSSVNTT NSGKVTTPSK RNGVEKLNNV VASVAVVEDI SPKIPGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.290 d.129.3 Bet v1-like

Predicted Domain #2
Region A:
Residues: [118-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKRCHWITPN SDPIYVLFHD EEWGVPVRDD KKLFELLVFS QALAEFSWPS ILRRRDDFRK  60
   61 LFEEFDPSAI AQFTEKRLMS LRVNGCLILS EQKLRAIVEN AKSVLKVKQE FGSFSNYCWR 120
  121 FVNHKPLRNG YRYGRQVPVK SPKAEYISKD MMQRGFRCVG PTVMYSFLQA SGIVNDHLTA 180
  181 CFRYQECNVE TERETKSHET ETKLDLHSPL LV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.69897
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle