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View Structure Prediction Details

Protein: STR12_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STR12_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554407 - gi|21554407|gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana]
170.0 [0..1] [299..1]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVTGTLSA ASSPAVAAAS FSAALRLSIT PTLAIASPPH LRWFSKFSRQ FLGGRISSLR  60
   61 PRIPSPCPIR LSGFPALKMR ASFSSGSSGS SASREILVQH LLVKNNDVEL FAELQKKFLD 120
  121 GEEMSDLAAE YSICPSKKDG GILGWVKLGQ MVPEFEEAAF KAELNQVVRC RTQFGLHLLQ 180
  181 VLSEREPVKD IQVEELHSKM QDPVF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 2pv3A
Description: No description for 2pv3A was found.

Predicted functions:

Term Confidence Notes
peptidyl-prolyl cis-trans isomerase activity 4.4182664267098 bayes_pls_golite062009
cis-trans isomerase activity 4.33661522951196 bayes_pls_golite062009
isomerase activity 2.83057106437196 bayes_pls_golite062009
macrolide binding 1.34183721806994 bayes_pls_golite062009
catalytic activity 1.25572252987503 bayes_pls_golite062009
FK506 binding 1.11705415888427 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [206-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEAQLIDVR EPNEIEIASL PGFKVFPLRQ FGTWAPDITS KLNPEKDTFV LCKVGGRSMQ  60
   61 VANWLQSQGF KSVYNITGGI QAYSLKVDPS IPTY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1tq1A
Description: Solution structure of At5g66040, a putative protein from Arabidosis Thaliana
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.05774816707958 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle