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View Structure Prediction Details

Protein: EF1B2_ARATH
Organism: Arabidopsis thaliana
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF1B2_ARATH.

Description E-value Query
Range
Subject
Range
gi|114582926 - gi|114582926|ref|XP_001135927.1| PREDICTED: similar to elongation factor-1-beta [Pan troglodytes]
277.0 [0..3] [224..132]
gi|24586721 - gi|24586721|gb|AAH39635.1| eukaryotic translation elongation factor 1 beta 2 [Mus musculus]
267.0 [0..2] [224..32]
gi|58760396 - gi|58760396|gb|AAW82108.1| eukaryotic translation elongation factor 1 beta 2-like [Bos taurus]
262.0 [0..3] [224..1]
gi|45934557 - gi|45934557|gb|AAS79338.1| elongation factor 1 beta [Aedes aegypti]
261.0 [0..3] [224..1]
gi|149046006, gi... - gi|34876714|ref|XP_343581.1| PREDICTED: similar to eukaryotic translation elongation factor 1 beta 2...
260.0 [0..3] [224..1]
gi|77748286 - gi|77748286|gb|AAI06341.1| Wu:fj06d02 protein [Xenopus laevis]
260.0 [0..3] [224..1]
EF1D_PIMBR - Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3
260.0 [0..1] [224..1]
gi|57110955, gi|... - gi|74005225|ref|XP_859898.1| PREDICTED: similar to eukaryotic translation elongation factor 1 beta 2...
258.0 [0..3] [224..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTFSDLHT EEGVKSVEEH LAGKTYISGD QLSVDDVKVY AAVPVKPSDA FPNASKWYES  60
   61 VASQLAKSFP GKAVGVQFGG SAAAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.30103
Match: 1jlvA
Description: Class delta GST
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [86-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAVEAEAPAA AADDDDDMDL FGDETEEEKK AAEEREAAKK DTKKPKESGK SSVLMDVKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [145-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDDETDMKKL EEAVRGVEMP GLFWGASKLV PVGYGIKKLT IMFTIVDDLV SPDNLIEDFL  60
   61 TSEPNNEYIQ SCDIVAFNKI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.30103
Match: 1b64A
Description: SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle