YRC Public Data Repository - Protein Structure Prediction

Protein:	EF1B2_ARATH
Organism:	Arabidopsis thaliana
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF1B2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114582926 - gi\|114582926\|ref\|XP_001135927.1\| PREDICTED: similar to elongation factor-1-beta [Pan troglodytes]	277.0	[0..3]	[224..132]
gi\|24586721 - gi\|24586721\|gb\|AAH39635.1\| eukaryotic translation elongation factor 1 beta 2 [Mus musculus]	267.0	[0..2]	[224..32]
gi\|58760396 - gi\|58760396\|gb\|AAW82108.1\| eukaryotic translation elongation factor 1 beta 2-like [Bos taurus]	262.0	[0..3]	[224..1]
gi\|45934557 - gi\|45934557\|gb\|AAS79338.1\| elongation factor 1 beta [Aedes aegypti]	261.0	[0..3]	[224..1]
gi\|149046006, gi... - gi\|34876714\|ref\|XP_343581.1\| PREDICTED: similar to eukaryotic translation elongation factor 1 beta 2...	260.0	[0..3]	[224..1]
gi\|77748286 - gi\|77748286\|gb\|AAI06341.1\| Wu:fj06d02 protein [Xenopus laevis]	260.0	[0..3]	[224..1]
EF1D_PIMBR - Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3	260.0	[0..1]	[224..1]
gi\|57110955, gi\|... - gi\|74005225\|ref\|XP_859898.1\| PREDICTED: similar to eukaryotic translation elongation factor 1 beta 2...	258.0	[0..3]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTFSDLHT EEGVKSVEEH LAGKTYISGD QLSVDDVKVY AAVPVKPSDA FPNASKWYES  60
   61 VASQLAKSFP GKAVGVQFGG SAAAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.30103
Match:	1jlvA
Description:	Class delta GST
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [86-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAVEAEAPAA AADDDDDMDL FGDETEEEKK AAEEREAAKK DTKKPKESGK SSVLMDVKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.294	N/A	N/A	a.101.1	Uteroglobin-like
View	Download	0.285	N/A	N/A	a.64.1	Saposin
View	Download	0.285	N/A	N/A	a.64.1	Saposin
View	Download	0.254	N/A	N/A	a.7.10	Description not found.
View	Download	0.238	N/A	N/A	a.157.1	Skp1 dimerisation domain-like
View	Download	0.238	N/A	N/A	a.157.1	Skp1 dimerisation domain-like
View	Download	0.237	N/A	N/A	a.10.2	Description not found.
View	Download	0.209	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #3

Region A:
Residues: [145-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDDETDMKKL EEAVRGVEMP GLFWGASKLV PVGYGIKKLT IMFTIVDDLV SPDNLIEDFL  60
   61 TSEPNNEYIQ SCDIVAFNKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1b64A
Description:	SOLUTION STRUCTURE OF THE GUANINE NUCLEOTIDE EXCHANGE FACTOR DOMAIN FROM HUMAN ELONGATION FACTOR-ONE BETA, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits