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View Structure Prediction Details

Protein: gi|13430830, gi|...
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13430830, gi|....

Description E-value Query
Range
Subject
Range
gi|74007803 - gi|74007803|ref|XP_860306.1| PREDICTED: similar to ATPase, Cu++ transporting, alpha polypeptide isof...
238.0 [0..2] [318..190]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEEKKPEA AEEKKMEEKK PEEKKEGEDK KVDAEKKGED SDKKPQEGES NKDSKEDSAP  60
   61 AAPEAPAPPP P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.045757
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [72-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQEVVLKVYM HCEGCARKVR RCLKGFEGVE DVMTDCKTGK VVVKGEKADP LKVLARVQRK  60
   61 THRQVQLLSP IPPPPPPPEK KAEEDKPIVE EKKVEPPVVV TVVLKVHMHC EACATEIKKR 120
  121 IMRMKGVESA ESDLKSSQVT VKGVFEPQKL VEYVYKRTGK HAAIMKIDPP PPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.221849
Match: 2ew9A
Description: No description for 2ew9A was found.

Predicted Domain #3
Region A:
Residues: [245-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEEAAAAAE GEKKEEEKGE GESKGEEGKD DKAKTDEEKK EGDGGKGEGE AADNGGGEEE  60
   61 GKVVEVRKIE NPYYYYYYQP PRVAIPPMEM PPHAYPPQLF SDENPNACTV M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1qupA
Description: Copper chaperone for superoxide dismutase, C-terminal domain; Copper chaperone for superoxide dismutase, N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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