| Protein: | LA1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 433 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LA1_ARATH.
| Description | E-value | Query Range |
Subject Range |
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239.0 | [0..19] | [425..12] |
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239.0 | [0..19] | [425..12] |
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239.0 | [0..19] | [425..12] |
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239.0 | [0..19] | [425..12] |
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Region A: Residues: [1-201] |
1 11 21 31 41 51
| | | | | |
1 MSIPCLTEET AKTVLRQVEF YFSDSNLPID DFLKKTVTES EDGLVSLALI CSFSKMRGYL 60
61 KLGDSKGDDI PEDTIKAVAD TLRTSSALKI SDDGKKVGRS TELLKLEDLI EQLNARTVAA 120
121 SPFSYDVKRE DVESFFSQYG KVNSVRMPRH VAESRIFSGV ALVEFPTEED AQNVMKQNLV 180
181 FAGQELELKP KKEFDNEREK D
|
| Detection Method: |  |
| Confidence: | 35.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-274] |
1 11 21 31 41 51
| | | | | |
1 EVKFANYQPQ KGSANQKNGS DHKNNSAYEP DYPKGLIISF TLKRSAEEGT TEQKSSEEPT 60
61 DKTMEESETK PAD
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.480 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.445 | a.230.1 | Description not found. |
| View | Download | 0.412 | d.67.4 | Description not found. |
| View | Download | 0.372 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.348 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.348 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.340 | a.159.4 | Description not found. |
| View | Download | 0.277 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.246 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [275-433] |
1 11 21 31 41 51
| | | | | |
1 TPDADKENTG EVQAEGAEDE DDEKEEKGAL ATHKDNKDVV LREDLKAVFG KFGDVKFVDF 60
61 KMGSETGYLR FDEPEASQKA RAAAVLANEG GLAVKNFIAV LEPVIGEAEK EYWTLLRSKD 120
121 RFDKGGRGGR GGRRGGRFGR KRGSDSPGGR WNKSQKVEA
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| Detection Method: | |
| Confidence: | 10.522879 |
| Match: | 1x4gA |
| Description: | Solution structure of RRM domain in Nucleolysin TIAR |
Matching Structure (courtesy of the PDB): |
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