YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194320007, gi...
Organism:	Homo sapiens
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194320007, gi....

Description	E-value	Query Range	Subject Range
gi\|109095185 - gi\|109095185\|ref\|XP_001118191.1\| PREDICTED: neurotrophin 3 [Macaca mulatta]	232.0	[0..1]	[119..209]
gi\|51949752 - gi\|51949752\|gb\|AAU14794.1\| neurotrophin 3 precursor [synthetic construct]	232.0	[0..1]	[119..139]
gi\|76616611 - gi\|76616611\|ref\|XP_610909.2\| PREDICTED: similar to Neurotrophin-3 precursor (NT-3) (Neurotrophic fac...	228.0	[0..1]	[119..186]
NTF3 - neurotrophin 3 gi\|60818243, gi\|... - gi\|60818243\|gb\|AAX36456.1\| neurotrophin 3 [synthetic construct], gi\|208968625\|dbj\|BAG74151.1\| neurot...	228.0	[0..1]	[119..139]
gi\|114642998 - gi\|114642998\|ref\|XP_522331.2\| PREDICTED: neurotrophin 3 [Pan troglodytes]	228.0	[0..1]	[119..139]
gi\|73997470 - gi\|73997470\|ref\|XP_543858.2\| PREDICTED: similar to Neurotrophin-3 precursor (NT-3) (Neurotrophic fac...	228.0	[0..1]	[119..139]
NTF3_MOUSE - Neurotrophin-3 OS=Mus musculus GN=Ntf3 PE=1 SV=1	228.0	[0..1]	[119..140]
NTF3_RAT - Neurotrophin-3 OS=Rattus norvegicus GN=Ntf3 PE=2 SV=1	227.0	[0..1]	[119..140]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YAEHKSHRGE YSVCDSESLW VTDKSSAIDI RGHQVTVLGE IKTGNSPVKQ YFYETRCKEA  60
   61 RPVKNGCRGI DDKHWNSQCK TSQTYVRALT SENNKLVGWR WIRIDTSCVC ALSRKIGRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	1b8kA
Description:	Neurotrophin 3, NT3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.587687438033265	bayes_pls_golite062009
protein binding	0.53742562922963	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: