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View Structure Prediction Details

Protein: gi|215708812, gi...
Organism: Oryza sativa Japonica Group
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215708812, gi....

Description E-value Query
Range
Subject
Range
gi|85118589 - gi|85118589|ref|XP_965478.1| hypothetical protein NCU02705 [Neurospora crassa OR74A]
gi|38567214, gi|... - gi|38567214|emb|CAE76506.1| related to F1F0 ATPase complex assembly protein [Neurospora crassa], gi|...
236.0 [0..44] [267..132]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRARWAAGM LRRASSGEAS LAARAVFARG FLGLNMKASK ETIEKKEKDK ARLMDEMSRG  60
   61 YFADIAEIRK NGGKLATANK IIIPEIAAVK FPDLSVKSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGRTVNLPLV APPRNDDPQT GNTVDTQNDD CKAGDMVVPD ASLVCLSFRA SSQKMAETWS  60
   61 LPFLDAFSSA GNIQVYEVSF IDSWLLSSSP VRQVFLKVMT KSNNPQRHAV YAFGDHYYFR 120
  121 KKLHILNLLT GYIYLVDRLG RVRWQGFGSA TQEELSSLTA CTSILLDGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.30103
Match: 1kngA
Description: Thioredoxin-like protein CcmG (CycY, DsbE)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142133664747919 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle