YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29028950, gi\|...
Organism:	Arabidopsis thaliana
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29028950, gi|....

Description	E-value	Query Range	Subject Range
gi\|25404939, gi\|... - gi\|6633818\|gb\|AAF19677.1\|AC009519_11 F1N19.17 [Arabidopsis thaliana], pir\|\|D96669 protein F1N19.17 [...	350.0	[0..1]	[537..1]
gi\|169783346 - gi\|169783346\|ref\|XP_001826135.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774879 - gi\|83774879\|dbj\|BAE65002.1\| unnamed protein product [Aspergillus oryzae]	246.0	[0..6]	[521..281]
gi\|34394308, gi\|... - gi\|50936119\|ref\|XP_477587.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|34394308\|d...	245.0	[0..4]	[508..236]
gi\|86196596, gi\|... - gi\|86196596\|gb\|EAQ71234.1\| hypothetical protein MGCH7_ch7g641 [Magnaporthe grisea 70-15], gi\|1492103...	241.0	[0..7]	[521..525]
gi\|115386198, gi... - gi\|115386198\|ref\|XP_001209640.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	239.0	[0..3]	[521..473]
gi\|90306859, gi\|... - gi\|90306859\|gb\|EAS36490.1\| hypothetical protein CIMG_01844 [Coccidioides immitis RS], gi\|119194939\|r...	232.0	[0..3]	[532..267]
gi\|67536886, gi\|... - gi\|67536886\|ref\|XP_662217.1\| hypothetical protein AN4613.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	229.0	[0..6]	[521..276]
gi\|70989029, gi\|... - gi\|70989029\|ref\|XP_749364.1\| 37S ribosomal protein Rsm22 [Aspergillus fumigatus Af293], gi\|66846995\|... gi\|159128778 - gi\|159128778\|gb\|EDP53892.1\| 37S ribosomal protein Rsm22 [Aspergillus fumigatus A1163]	226.0	[0..3]	[523..281]
gi\|116192927, gi... - gi\|88182094\|gb\|EAQ89562.1\| hypothetical protein CHGG_06181 [Chaetomium globosum CBS 148.51], gi\|1161...	222.0	[0..7]	[520..282]
gi\|92887158 - gi\|92887158\|gb\|ABE88676.1\| conserved hypothetical protein [Medicago truncatula]	215.0	[0..4]	[358..10]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAQKVFTV ETLRSASKQC LRCLVVPVRL RRAIKKYLRE EDDPHIRKKV RQLSESFQEI  60
   61 KDTNLQLPET TAKSLADSMN SLETKRWKIQ TVYGDSGLQY RDGETAAYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.39794
Match:	1t43A
Description:	Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [110-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASRMPAVFSV CYRVLIEIRR RVPGFTPTRV LDFGAGTGSG FWAVKEVWPK SVEKVNIVEP  60
   61 SQSMQRAGRN LIQGLKDLPL IHGYTSLLAL NKEINKKSER KHDLVIASYV LGEIPSLKDR 120
  121 ITVVRQLWDL TDDLLVLVEP GTPHGANIIS QMRSHILWME KRKLRKLEKK MKKDGKEVLD 180
  181 LKSGAHIVAP CPHDGKCPLE NTGKYCHFVQ RLQRTSSQRS YKRTKGVPLR GFEDEKFCFV 240
  241 AFRRGQRPRE LWPLDGMKLE TLKERRANKK PEDLEIDYED FIKSQVVEVP YIDPRAYDSD 300
  301 TMDENEEEQE DGGGTDEDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1aqiA
Description:	DNA methylase TaqI
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [430-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKIEEEIEEE SERASVGGGW GRIIFPPFRK GKQVTLDMCV PTKEDGSEGA FERRVITKSK  60
   61 NPDLHLQAKK SFWGDLWPLT TQQENGKKKQ VDAEWCRPDE DQKWSGWP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits