| Protein: | gi|29028950, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 537 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29028950, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
350.0 | [0..1] | [537..1] |
|
|
246.0 | [0..6] | [521..281] |
|
|
245.0 | [0..4] | [508..236] |
|
|
241.0 | [0..7] | [521..525] |
|
|
239.0 | [0..3] | [521..473] |
|
|
232.0 | [0..3] | [532..267] |
|
|
229.0 | [0..6] | [521..276] |
|
|
226.0 | [0..3] | [523..281] |
|
|
222.0 | [0..7] | [520..282] |
|
|
215.0 | [0..4] | [358..10] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MANAQKVFTV ETLRSASKQC LRCLVVPVRL RRAIKKYLRE EDDPHIRKKV RQLSESFQEI 60
61 KDTNLQLPET TAKSLADSMN SLETKRWKIQ TVYGDSGLQY RDGETAAYI
|
| Detection Method: |  |
| Confidence: | 7.39794 |
| Match: | 1t43A |
| Description: | Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [110-429] |
1 11 21 31 41 51
| | | | | |
1 ASRMPAVFSV CYRVLIEIRR RVPGFTPTRV LDFGAGTGSG FWAVKEVWPK SVEKVNIVEP 60
61 SQSMQRAGRN LIQGLKDLPL IHGYTSLLAL NKEINKKSER KHDLVIASYV LGEIPSLKDR 120
121 ITVVRQLWDL TDDLLVLVEP GTPHGANIIS QMRSHILWME KRKLRKLEKK MKKDGKEVLD 180
181 LKSGAHIVAP CPHDGKCPLE NTGKYCHFVQ RLQRTSSQRS YKRTKGVPLR GFEDEKFCFV 240
241 AFRRGQRPRE LWPLDGMKLE TLKERRANKK PEDLEIDYED FIKSQVVEVP YIDPRAYDSD 300
301 TMDENEEEQE DGGGTDEDEE
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1aqiA |
| Description: | DNA methylase TaqI |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [430-537] |
1 11 21 31 41 51
| | | | | |
1 DKIEEEIEEE SERASVGGGW GRIIFPPFRK GKQVTLDMCV PTKEDGSEGA FERRVITKSK 60
61 NPDLHLQAKK SFWGDLWPLT TQQENGKKKQ VDAEWCRPDE DQKWSGWP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.472 | d.73.1 | RuBisCO, small subunit |
| View | Download | 0.364 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.364 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.321 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.286 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.277 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.243 | d.52.4 | YhbC-like, N-terminal domain |
