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View Structure Prediction Details

Protein: gi|106879191, gi...
Organism: Arabidopsis thaliana
Length: 282 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|106879191, gi....

Description E-value Query
Range
Subject
Range
gi|6728980 - gi|6728980|gb|AAF26978.1|AC018363_23 putative CCHC-type zinc finger protein [Arabidopsis thaliana]
370.0 [0..1] [282..64]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAPTGCFK CGRPGHWSRD CPSSAPVAGN NSVSSSSAPS QIPNNEFQRS SSKSGTSIAP  60
   61 APKVTKTRVQ RPKLTPELLL SEDGLGYVLR YFPKSFKYRG RGKEVSDLGN LIRLYSEWHT 120
  121 HLLPYYSFDH FVHKVQQVAS TKRVKNCINE LRERVASGVD PNKLYEKQEE NTVPSDDQDM 180
  181 DQPSHDEENI PS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 43.102373
Match: PF07962.3
Description: No description for PF07962.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSVDADTNAD AFEDSMLNEI FDNASKLPSD EQNMDKSSEL TEEQRARMEA NRLKAMEKAQ  60
   61 NISEEQRVRM EANRLKALER AKARLQPNQD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle