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View Structure Prediction Details

Protein: gi|51969050, gi|...
Organism: Arabidopsis thaliana
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51969050, gi|....

Description E-value Query
Range
Subject
Range
gi|6587811, gi|2... - gi|6587811|gb|AAF18502.1|AC010924_15 ESTs gb|AI992787, gb|T20398 come from this gene. [Arabidopsis t...
297.0 [0..1] [214..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAKEKKNP EISVSITIST WGAFAVYVIT GLFLIFGFHV VRNKYSVDLI SDPTLTLRLL  60
   61 WIIEFPIVVI IYSLFRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPEKCSYFRA VGRSLVGLIA GALINALGAV SLGAPIGMQS LSKTIHWSFL MSVFTVVPAT  60
   61 AVLGASWIDW HRIFASLKPI GIIEHMLLVP AYGAIIGGWF GAWPMPLDWE RPWQEWPICV 120
  121 CYGAIGGYIG GQMVSLLTLL SEHKNLKLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle