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View Structure Prediction Details

Protein: gi|28973413, gi|...
Organism: Arabidopsis thaliana
Length: 77 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28973413, gi|....

Description E-value Query
Range
Subject
Range
gi|4877649 - gi|4877649|gb|AAD31395.1|AF114162_1 gibberellin MYB transcription factor [Lolium temulentum]
122.0 [0..8] [76..78]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV GDRWELIAGR  60
   61 IPGRTAGEIE RFWVMKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.522879
Match: 1a5jA
Description: CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle