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View Structure Prediction Details

Protein: Y2608_ARATH
Organism: Arabidopsis thaliana
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2608_ARATH.

Description E-value Query
Range
Subject
Range
Y3158_ARATH - B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1
205.0 [0..1] [239..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA  60
   61 ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS QSYVLTKGWS RYVKEKHLDA 120
  121 GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1widA
Description: Solution Structure of the B3 DNA-Binding Domain of RAV1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [159-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NASLQYYPHA GAQAVESQRG NSKTLRLFGV NMECQLDSDW SEPSTPDGSN TYTTNHDQFH  60
   61 FYPQQQHYPP PYYMDISFTG DMNRTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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