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View Structure Prediction Details

Protein: gi|26449484, gi|...
Organism: Arabidopsis thaliana
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26449484, gi|....

Description E-value Query
Range
Subject
Range
gi|2739372, gi|7... - pir||T00980 hypothetical protein At2g26470 [imported] - Arabidopsis thaliana, gi|2739372|gb|AAC14496...
310.0 [0..1] [487..1]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRTRCTLR PDDVPRASHR HTVPTRFLHL DRYRPSYNVA PGSYIPVLRR DNEEVVGDGV  60
   61 VVHCMKWGLV PSFTKKTDKP DFFKMFNARS ESVAEKASFR RLLPKNRCLV AVDGFYEWKK 120
  121 EGSKKQPYYI HFEDGRPLVF AALFDTWQNS GGETLYTFTI LTTASSSALQ WLHDRMPVIL 180
  181 GDKDSIDTWL DDPSTTKLQP LLSPYEKSDL VWYPVTSAIG KPTF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 2icuA
Description: No description for 2icuA was found.

Predicted Domain #2
Region A:
Residues: [225-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGPECIQQIP LKTSQNSLIS KFFSTKQPKT DEGDKETKST DANIIVDLKK EPTAEKDTFS  60
   61 DSIKKIEELD GEKDMSNVAK NLEFQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [311-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVKAEPFVED NSAVASLPEP VKNDVQEGTK EEGKSLKTGL TKETGESSAS IPAESYILDL  60
   61 QRISKEEPET QSHHFFTADE RLNQLHEAVE DIPGNENQKT VLTSPTTKEG GLVFSEKSGT 120
  121 KRDYEVFSAQ EKPQKHYERL QNVKSSGKQG KMHGMGKSNI KKSKETQSTL HFFFDEK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle