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View Structure Prediction Details

Protein: gi|26449484, gi|...
Organism: Arabidopsis thaliana
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26449484, gi|....

Description E-value Query
Range
Subject
Range
gi|2739372, gi|7... - pir||T00980 hypothetical protein At2g26470 [imported] - Arabidopsis thaliana, gi|2739372|gb|AAC14496...
310.0 [0..1] [487..1]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRTRCTLR PDDVPRASHR HTVPTRFLHL DRYRPSYNVA PGSYIPVLRR DNEEVVGDGV  60
   61 VVHCMKWGLV PSFTKKTDKP DFFKMFNARS ESVAEKASFR RLLPKNRCLV AVDGFYEWKK 120
  121 EGSKKQPYYI HFEDGRPLVF AALFDTWQNS GGETLYTFTI LTTASSSALQ WLHDRMPVIL 180
  181 GDKDSIDTWL DDPSTTKLQP LLSPYEKSDL VWYPVTSAIG KPTF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 2icuA
Description: No description for 2icuA was found.

Predicted Domain #2
Region A:
Residues: [225-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGPECIQQIP LKTSQNSLIS KFFSTKQPKT DEGDKETKST DANIIVDLKK EPTAEKDTFS  60
   61 DSIKKIEELD GEKDMSNVAK NLEFQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [311-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVKAEPFVED NSAVASLPEP VKNDVQEGTK EEGKSLKTGL TKETGESSAS IPAESYILDL  60
   61 QRISKEEPET QSHHFFTADE RLNQLHEAVE DIPGNENQKT VLTSPTTKEG GLVFSEKSGT 120
  121 KRDYEVFSAQ EKPQKHYERL QNVKSSGKQG KMHGMGKSNI KKSKETQSTL HFFFDEK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle