YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18377866, gi|...
Organism: Arabidopsis thaliana
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18377866, gi|....

Description E-value Query
Range
Subject
Range
gi|7670041 - gi|7670041|dbj|BAA94995.1| unnamed protein product [Arabidopsis thaliana]
368.0 [0..2] [314..44]
gi|108862831 - gi|108862831|gb|ABA98957.2| ribosomal protein S6 containing protein, expressed [Oryza sativa (japoni...
232.0 [0..59] [274..68]
gi|37199919, gi|... - gi|37681168|ref|NP_935777.1| 30S ribosomal protein S6 [Vibrio vulnificus YJ016], gi|37199919|dbj|BAC...
173.0 [0..116] [232..8]
RS6_CHRSD - 30S ribosomal protein S6 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 1376...
171.0 [0..120] [253..1]
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea GN=rpsF PE=3 SV=1
171.0 [0..120] [267..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1
170.0 [0..120] [228..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1
RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1
gi|170692292, gi... - gi|170692292|ref|ZP_02883455.1| ribosomal protein S6 [Burkholderia graminis C4D1M], gi|170142722|gb|...
170.0 [0..120] [243..1]
gi|33566505 - gi|33566505|emb|CAE37761.1| 30s ribosomal protein s6 [Bordetella parapertussis]
gi|33597054 - gi|33597054|ref|NP_884697.1| 30S ribosomal protein S6 [Bordetella parapertussis 12822]
gi|33568499, gi|... - gi|33600899|ref|NP_888459.1| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi|33568499|...
170.0 [0..120] [227..32]
gi|166961388, gi... - gi|167420582|ref|ZP_02312335.1| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10...
gi|229695559, gi... - gi|229839193|ref|ZP_04459352.1| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...
gi|167423107, gi... - gi|167423107|ref|ZP_02314860.1| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730...
gi|229836649, gi... - gi|229836649|ref|ZP_04456815.1| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi|2...
RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=...
RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1
gi|165919840, gi... - gi|165928153|ref|ZP_02223985.1| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101...
gi|165989687, gi... - gi|166011303|ref|ZP_02232201.1| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],...
gi|166214044, gi... - gi|166214044|ref|ZP_02240079.1| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]...
gi|167049370, gi... - gi|167401345|ref|ZP_02306845.1| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]...
RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8...
gi|165937530, gi... - gi|89102329|ref|ZP_01174971.1| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str....
RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1
RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1
gi|149288953, gi... - gi|153997316|ref|ZP_02022416.1| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi|149288953|g...
gi|45435253, gi|... - gi|45440396|ref|NP_991935.1| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ...
gi|22124559, gi|... - gi|22124559|ref|NP_667982.1| 30S ribosomal protein S6 [Yersinia pestis KIM], gi|21957359|gb|AAM84233...
gi|15981463, gi|... - gi|218930553|ref|YP_002348428.1| 30S ribosomal protein S6 [Yersinia pestis CO92], gi|16123685|ref|NP...
RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=...
gi|77961292 - gi|77961292|ref|ZP_00825133.1| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969]
RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1
gi|77958749 - gi|77958749|ref|ZP_00822777.1| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970]
RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1
RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3...
RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1
gi|77973976 - gi|77973976|ref|ZP_00829519.1| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641]
gi|77977622 - gi|77977622|ref|ZP_00833066.1| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909]
gi|229899757, gi... - gi|229899757|ref|ZP_04514898.1| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...
169.0 [0..120] [249..1]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLLHASSS LVSLRPRIDG RDSFINPSRV CLNPSLGRRG SKPLPLVAAA KKKKSKKDDN  60
   61 HNFSARPDEA TGPFPESILL KEKKIDEEGD LLPEFADAEE KELYQFLDLQ LQSDLNEER

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEVVYLI HEKHAEEVES INQKVQDYLK EKKGKVWRFS DWGMRRLAYK IQKAENAHYI  60
   61 LMNFEIEAKY LNEFKGLLDS DERVIRHLVM KRDEAITEDC PPPPEFHSVR AGDEYYDDDE 120
  121 EEEIEEDEDE GEGEDEEDAD NIEYEVDDDG NVVMVLYGDE EEGEEEEDGA SEQEEGQDKS 180
  181 TNGRRETRRT VNVGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.09691
Match: 1p6gF
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle