YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18377866, gi\|...
Organism:	Arabidopsis thaliana
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18377866, gi|....

Description	E-value	Query Range	Subject Range
gi\|7670041 - gi\|7670041\|dbj\|BAA94995.1\| unnamed protein product [Arabidopsis thaliana]	368.0	[0..2]	[314..44]
gi\|108862831 - gi\|108862831\|gb\|ABA98957.2\| ribosomal protein S6 containing protein, expressed [Oryza sativa (japoni...	232.0	[0..59]	[274..68]
gi\|37199919, gi\|... - gi\|37681168\|ref\|NP_935777.1\| 30S ribosomal protein S6 [Vibrio vulnificus YJ016], gi\|37199919\|dbj\|BAC...	173.0	[0..116]	[232..8]
RS6_CHRSD - 30S ribosomal protein S6 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 1376...	171.0	[0..120]	[253..1]
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1 RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea GN=rpsF PE=3 SV=1	171.0	[0..120]	[267..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	170.0	[0..120]	[228..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	170.0	[0..120]	[243..1]
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	170.0	[0..120]	[227..32]
gi\|166961388, gi... - gi\|167420582\|ref\|ZP_02312335.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10... gi\|229695559, gi... - gi\|229839193\|ref\|ZP_04459352.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ... gi\|167423107, gi... - gi\|167423107\|ref\|ZP_02314860.1\| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229836649, gi... - gi\|229836649\|ref\|ZP_04456815.1\| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi\|2... RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=... RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1 gi\|165919840, gi... - gi\|165928153\|ref\|ZP_02223985.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101... gi\|165989687, gi... - gi\|166011303\|ref\|ZP_02232201.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],... gi\|166214044, gi... - gi\|166214044\|ref\|ZP_02240079.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]... gi\|167049370, gi... - gi\|167401345\|ref\|ZP_02306845.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]... RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8... gi\|165937530, gi... - gi\|89102329\|ref\|ZP_01174971.1\| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str.... RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1 RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1 gi\|149288953, gi... - gi\|153997316\|ref\|ZP_02022416.1\| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi\|149288953\|g... gi\|45435253, gi\|... - gi\|45440396\|ref\|NP_991935.1\| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124559, gi\|... - gi\|22124559\|ref\|NP_667982.1\| 30S ribosomal protein S6 [Yersinia pestis KIM], gi\|21957359\|gb\|AAM84233... gi\|15981463, gi\|... - gi\|218930553\|ref\|YP_002348428.1\| 30S ribosomal protein S6 [Yersinia pestis CO92], gi\|16123685\|ref\|NP... RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=... gi\|77961292 - gi\|77961292\|ref\|ZP_00825133.1\| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969] RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1 gi\|77958749 - gi\|77958749\|ref\|ZP_00822777.1\| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970] RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1 RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3... RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1 gi\|77973976 - gi\|77973976\|ref\|ZP_00829519.1\| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641] gi\|77977622 - gi\|77977622\|ref\|ZP_00833066.1\| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909] gi\|229899757, gi... - gi\|229899757\|ref\|ZP_04514898.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...	169.0	[0..120]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLLHASSS LVSLRPRIDG RDSFINPSRV CLNPSLGRRG SKPLPLVAAA KKKKSKKDDN  60
   61 HNFSARPDEA TGPFPESILL KEKKIDEEGD LLPEFADAEE KELYQFLDLQ LQSDLNEER

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.309	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.268	f.56.1	Description not found.
View	Download	0.262	c.44.1	Phosphotyrosine protein phosphatases I
View	Download	0.249	a.149.1	RNase III endonuclease catalytic domain
View	Download	0.247	a.60.11	Hypothetical protein YjbJ
View	Download	0.247	d.228.1	Replication modulator SeqA, C-terminal DNA-binding domain

Predicted Domain #2

Region A:
Residues: [120-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEVVYLI HEKHAEEVES INQKVQDYLK EKKGKVWRFS DWGMRRLAYK IQKAENAHYI  60
   61 LMNFEIEAKY LNEFKGLLDS DERVIRHLVM KRDEAITEDC PPPPEFHSVR AGDEYYDDDE 120
  121 EEEIEEDEDE GEGEDEEDAD NIEYEVDDDG NVVMVLYGDE EEGEEEEDGA SEQEEGQDKS 180
  181 TNGRRETRRT VNVGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits