YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254721195
Organism:	Bacillus anthracis str. A1055
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254721195.

Description	E-value	Query Range	Subject Range
gi\|47570605, gi\|... - gi\|47570605\|ref\|ZP_00241221.1\| cytidine deaminase [Bacillus cereus G9241], gi\|47552728\|gb\|EAL11163.1...	5.0E-48	[1..131]	[1..131]
gi\|42736968, gi\|... - gi\|42781047\|ref\|NP_978294.1\| cytidine deaminase [Bacillus cereus ATCC 10987], gi\|42736968\|gb\|AAS4090...	1.0E-47	[1..131]	[1..131]
gi\|167530102, gi... - gi\|167634650\|ref\|ZP_02392970.1\| cytidine deaminase [Bacillus anthracis str. A0442], gi\|167530102\|gb\|... gi\|167513347, gi... - gi\|167638499\|ref\|ZP_02396775.1\| cytidine deaminase [Bacillus anthracis str. A0193], gi\|167513347\|gb\|... gi\|164712188, gi... - gi\|165872057\|ref\|ZP_02216697.1\| cytidine deaminase [Bacillus anthracis str. A0488], gi\|164712188\|gb\|... gi\|118479470, gi... - gi\|118479470\|ref\|YP_896621.1\| cytidine deaminase [Bacillus thuringiensis str. Al Hakam], gi\|11841869... gi\|177653250, gi... - gi\|177653250\|ref\|ZP_02935502.1\| cytidine deaminase [Bacillus anthracis str. A0174], gi\|172081532\|gb\|... gi\|190567033, gi... - gi\|190567033\|ref\|ZP_03019949.1\| cytidine deaminase [Bacillus anthracis Tsiankovskii-I], gi\|190562024... gi\|170687458, gi... - gi\|170687458\|ref\|ZP_02878675.1\| cytidine deaminase [Bacillus anthracis str. A0465], gi\|170668653\|gb\|... gi\|170127637, gi... - gi\|170707393\|ref\|ZP_02897847.1\| cytidine deaminase [Bacillus anthracis str. A0389], gi\|170127637\|gb\|... gi\|196046381, gi... - gi\|196046381\|ref\|ZP_03113607.1\| cytidine deaminase [Bacillus cereus 03BB108], gi\|196022851\|gb\|EDX615... gi\|218905438, gi... - gi\|218905438\|ref\|YP_002453272.1\| cytidine deaminase [Bacillus cereus AH820], gi\|218535246\|gb\|ACK8764... gi\|196034298, gi... - gi\|196034298\|ref\|ZP_03101707.1\| cytidine deaminase [Bacillus cereus W], gi\|195992840\|gb\|EDX56799.1\| ... gi\|196039308, gi... - gi\|196039308\|ref\|ZP_03106614.1\| cytidine deaminase [Bacillus cereus NVH0597-99], gi\|196029935\|gb\|EDX... gi\|227003484, gi... - gi\|227817077\|ref\|YP_002817086.1\| cytidine deaminase [Bacillus anthracis str. CDC 684], gi\|227003484\|... gi\|225866282, gi... - gi\|225866282\|ref\|YP_002751660.1\| cytidine deaminase [Bacillus cereus 03BB102], gi\|225785979\|gb\|ACO26... gi\|228830358, gi... - gi\|228929344\|ref\|ZP_04092369.1\| Cytidine deaminase [Bacillus thuringiensis serovar pondicheriensis B... gi\|228842757, gi... - gi\|228916933\|ref\|ZP_04080495.1\| Cytidine deaminase [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|228811704, gi... - gi\|228948014\|ref\|ZP_04110300.1\| Cytidine deaminase [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|228935621, gi... - gi\|228935621\|ref\|ZP_04098436.1\| Cytidine deaminase [Bacillus thuringiensis serovar andalousiensis BG... gi\|228729413, gi... - gi\|229031949\|ref\|ZP_04187936.1\| Cytidine deaminase [Bacillus cereus AH1271], gi\|228729413\|gb\|EEL8040... gi\|228772283, gi... - gi\|228987551\|ref\|ZP_04147670.1\| Cytidine deaminase [Bacillus thuringiensis serovar tochigiensis BGSC... gi\|229123839, gi... - gi\|229123839\|ref\|ZP_04253033.1\| Cytidine deaminase [Bacillus cereus 95/8201], gi\|228659660\|gb\|EEL153... gi\|229093370, gi... - gi\|229093370\|ref\|ZP_04224477.1\| Cytidine deaminase [Bacillus cereus Rock3-42], gi\|228690026\|gb\|EEL43... gi\|229186540, gi... - gi\|229186540\|ref\|ZP_04313702.1\| Cytidine deaminase [Bacillus cereus BGSC 6E1], gi\|228596971\|gb\|EEK54... gi\|228625574, gi... - gi\|229157915\|ref\|ZP_04285989.1\| Cytidine deaminase [Bacillus cereus ATCC 4342], gi\|228625574\|gb\|EEK8... gi\|49332868, gi\|... - gi\|49481312\|ref\|YP_038356.1\| cytidine deaminase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|254684058 - gi\|254684058\|ref\|ZP_05147918.1\| cytidine deaminase [Bacillus anthracis str. CNEVA-9066] gi\|51974672, gi\|... - gi\|52141203\|ref\|YP_085627.1\| cytidine deaminase [Bacillus cereus E33L], gi\|51974672\|gb\|AAU16222.1\| c... gi\|229266020, gi... - gi\|229601612\|ref\|YP_002868590.1\| cytidine deaminase [Bacillus anthracis str. A0248], gi\|229266020\|gb... gi\|47529822, gi\|... - gi\|47529822\|ref\|YP_021171.1\| cytidine deaminase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475049... gi\|254736406 - gi\|254736406\|ref\|ZP_05194112.1\| cytidine deaminase [Bacillus anthracis str. Western North America US... gi\|49181123, gi\|... - gi\|49187196\|ref\|YP_030448.1\| cytidine deaminase [Bacillus anthracis str. Sterne], gi\|49181123\|gb\|AAT... gi\|254721892 - gi\|254721892\|ref\|ZP_05183681.1\| cytidine deaminase [Bacillus anthracis str. A1055] gi\|47555542, gi\|... - gi\|47567865\|ref\|ZP_00238573.1\| cytidine deaminase [Bacillus cereus G9241], gi\|47555542\|gb\|EAL13885.1... gi\|254750882 - gi\|254750882\|ref\|ZP_05202921.1\| cytidine deaminase [Bacillus anthracis str. Vollum] gi\|30264371, gi\|... - gi\|30264371\|ref\|NP_846748.1\| cytidine deaminase [Bacillus anthracis str. Ames], gi\|30259029\|gb\|AAP28... gi\|254741444 - gi\|254741444\|ref\|ZP_05199131.1\| cytidine deaminase [Bacillus anthracis str. Kruger B] gi\|254757790 - gi\|254757790\|ref\|ZP_05209817.1\| cytidine deaminase [Bacillus anthracis str. Australia 94]	1.0E-47	[1..130]	[1..130]
gi\|89208394, gi\|... - gi\|89208394\|ref\|ZP_01186903.1\| Cytidine deaminase, homotetrameric [Bacillus weihenstephanensis KBAB4... gi\|229013521, gi... - gi\|229013521\|ref\|ZP_04170655.1\| Cytidine deaminase [Bacillus mycoides DSM 2048], gi\|228747758\|gb\|EEL... gi\|228614458, gi... - gi\|229169049\|ref\|ZP_04296765.1\| Cytidine deaminase [Bacillus cereus AH621], gi\|228614458\|gb\|EEK71567... gi\|229135126, gi... - gi\|229135126\|ref\|ZP_04263928.1\| Cytidine deaminase [Bacillus cereus BDRD-ST196], gi\|228648355\|gb\|EEL...	2.0E-47	[1..130]	[1..130]
gi\|242232286, gi... - gi\|242256209\|ref\|ZP_04801104.1\| cytidine deaminase [Thermoanaerobacter sp. X513], gi\|242232286\|gb\|EE... gi\|241903470, gi... - gi\|241903470\|ref\|ZP_04788193.1\| cytidine deaminase [Thermoanaerobacter brockii subsp. finnii Ako-1],... gi\|114805408, gi... - gi\|167039068\|ref\|YP_001662053.1\| cytidine deaminase [Thermoanaerobacter sp. X514], gi\|166853308\|gb\|A... gi\|76797042, gi\|... - gi\|76797042\|ref\|ZP_00779385.1\| Cytidine deaminase, homotetrameric [Thermoanaerobacter ethanolicus AT...	4.0E-47	[2..131]	[5..134]
gi\|52786456, gi\|... - gi\|52786456\|ref\|YP_092285.1\| hypothetical protein BLi02721 [Bacillus licheniformis ATCC 14580], gi\|5...	5.0E-47	[1..130]	[1..130]
gi\|21402347, gi\|... - gi\|65321673\|ref\|ZP_00394632.1\| COG0295: Cytidine deaminase [Bacillus anthracis str. A2012], ref\|NP_6...	8.0E-47	[1..130]	[1..130]
gi\|20806970 - gi\|20806970\|ref\|NP_622141.1\| Cytidine deaminase [Thermoanaerobacter tengcongensis MB4] gi\|20806970, gi\|... - gi\|20806970\|ref\|NP_622141.1\| cytidine deaminase [Thermoanaerobacter tengcongensis MB4], gi\|20515450\|...	8.0E-47	[2..131]	[5..134]
gi\|74492733, gi\|... - gi\|75759783\|ref\|ZP_00739861.1\| Cytidine deaminase [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228900511, gi... - gi\|228900511\|ref\|ZP_04064735.1\| Cytidine deaminase [Bacillus thuringiensis IBL 4222], gi\|228859116\|g...	1.0E-46	[1..131]	[1..131]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKKYIEEA NKMLSKAYIP YSKFPVGAAL VTKEGKIYTG CNIENASYGL CNCAERTAIF  60
   61 KAVSEGERDF SYLVITGETD GPISPCGACR QVIAEFCDPK MPVLLTNVKG DEKEVTVEQL 120
  121 LPGAFTNDDL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2d30A
Description:	No description for 2d30A was found.

Predicted functions:

Term	Confidence	Notes
cytidine deaminase activity	4.42667374679603	bayes_pls_golite062009
deaminase activity	2.76997916054448	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.27736397496642	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
binding	1.64474382695496	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.51294035758003	bayes_pls_golite062009
IMP cyclohydrolase activity	1.34771936728813	bayes_pls_golite062009
receptor binding	1.25331530291023	bayes_pls_golite062009
hydrolase activity	1.20889076546073	bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity	1.06178740854563	bayes_pls_golite062009
nucleoside binding	0.66793245260795	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	0.36832789692523	bayes_pls_golite062009
cyclohydrolase activity	0.308525511259279	bayes_pls_golite062009
transition metal ion binding	0.25533482618887	bayes_pls_golite062009
protein binding	0.072557222523031	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.0520808212384716	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: