YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229342129, gi...
Organism:	Vibrio cholerae TM 11079-80
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229342129, gi....

Description	E-value	Query Range	Subject Range
gi\|69936462, gi\|... - gi\|69936462\|ref\|ZP_00631288.1\| Nitrogen regulatory protein P-II [Paracoccus denitrificans PD1222], g...	203.0	[0..6]	[121..610]
gi\|114327623, gi... - gi\|114327623\|ref\|YP_744780.1\| nitrogen regulatory protein P-II [Granulibacter bethesdensis CGDNIH1],...	193.0	[0..7]	[121..71]
gi\|1773134 - gi\|1773134\|gb\|AAB40206.1\| glutamine synthetase activity regulation protein [Escherichia coli]	193.0	[0..1]	[121..38]
gi\|24050626, gi\|... - ref\|NP_706344.1\| glutamine synthetase activity regulation protein [Shigella flexneri 2a str. 301], ... gi\|237707555, gi... - gi\|237707555\|ref\|ZP_04538036.1\| nitrogen regulatory protein P-II 2 [Escherichia sp. 3_2_53FAA], gi\|2... gi\|117622710, gi... - gi\|117622710\|ref\|YP_851623.1\| glutamine synthetase activity regulation protein [Escherichia coli APE... gi\|110614026, gi... - gi\|110804478\|ref\|YP_687998.1\| nitrogen regulatory protein P-II 2 [Shigella flexneri 5 str. 8401], gi...	192.0	[0..1]	[121..38]
gi\|118709863, gi... - gi\|118709863\|ref\|ZP_01562443.1\| nitrogen regulatory protein P-II [Burkholderia cenocepacia MC0-3], g... gi\|116648975, gi... - gi\|67667319\|ref\|ZP_00464545.1\| Nitrogen regulatory protein P-II [Burkholderia cenocepacia HI2424], g... gi\|67659096, gi\|... - gi\|67659096\|ref\|ZP_00456462.1\| Nitrogen regulatory protein P-II [Burkholderia cenocepacia AU 1054], ...	187.0	[0..6]	[121..21]
gi\|37680932, gi\|... - gi\|37680932\|ref\|NP_935541.1\| nitrogen regulatory protein PII [Vibrio vulnificus YJ016], gi\|37199682\|...	186.0	[0..3]	[121..14]
gi\|77968409, gi\|... - gi\|78067664\|ref\|YP_370433.1\| nitrogen regulatory protein P-II [Burkholderia sp. 383], gi\|77968409\|gb...	184.0	[0..6]	[121..21]
gi\|15156872, gi\|... - gi\|15889072\|ref\|NP_354753.1\| hypothetical protein AGR_C_3252 [Agrobacterium tumefaciens str. C58], g... gi\|25301256 - pir\|\|A97573 nitrogen regulatory protein p-II [imported] - Agrobacterium tumefaciens (strain C58, Cer...	183.0	[0..10]	[121..46]
gi\|27361166, gi\|... - gi\|27365020\|ref\|NP_760548.1\| nitrogen regulatory protein P-II [Vibrio vulnificus CMCP6], gi\|27361166...	183.0	[0..3]	[121..2]
gi\|83309794, gi\|... - gi\|83309794\|ref\|YP_420058.1\| nitrogen regulatory protein PII [Magnetospirillum magneticum AMB-1], gi...	181.0	[0..7]	[121..12]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDCFREEEM KLINAIIKPF KLDDVREALA DVGIEGMTVS EVKGFGRQKG HTELYRGAEY  60
   61 QVDFLPKVKI EIATQSDNVD RVVEAIIKAA HTGKIGDGKI FVYDLSQAVR IRTGEMDSEA 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1pilA
Description:	STRUCTURE OF THE ESCHERICHIA COLI SIGNAL TRANSDUCING PROTEIN PII
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.84048896890546	bayes_pls_golite062009
binding	0.304100025288714	bayes_pls_golite062009
catalytic activity	0.258697307111435	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: