YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254001328, gi...
Organism:	Helicobacter pylori B38
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254001328, gi....

Description	E-value	Query Range	Subject Range
gi\|107836768, gi... - gi\|108562995\|ref\|YP_627311.1\| 2-oxoglutarate-acceptor oxidoreductase subunit OorB [Helicobacter pylo...	245.0	[0..1]	[273..1]
gi\|4155085, gi\|1... - gi\|4155085\|gb\|AAD06120.1\| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99], gi\|156... gi\|7431594 - pir\|\|H71919 chain of 2-oxoglutarate oxidoreductase - Helicobacter pylori (strain J99)	244.0	[0..1]	[273..1]
gi\|110602061, gi... - gi\|222055756\|ref\|YP_002538118.1\| thiamine pyrophosphate protein domain protein TPP-binding [Geobacte...	239.0	[0..1]	[271..1]
gi\|109947920, gi... - gi\|109947920\|ref\|YP_665148.1\| 2-oxoglutarate-acceptor oxidoreductase subunit OorB [Helicobacter acin...	237.0	[0..1]	[273..1]
gi\|88914985, gi\|... - gi\|88938272\|ref\|ZP_01143748.1\| keto/oxoacid ferredoxin oxidoreductase, beta subunit [Geobacter urani...	237.0	[0..1]	[271..1]
gi\|39983450, gi\|... - gi\|39996569\|ref\|NP_952520.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter sulfur...	236.0	[0..1]	[271..1]
gi\|78193830, gi\|... - gi\|78222575\|ref\|YP_384322.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter metall...	232.0	[0..1]	[273..1]
gi\|2935180\|gb\|AA... - OorB subunit of 2-oxoglutarate:acceptor oxidoreductase [Helicobacter pylori] gi\|2935180 - gi\|2935180\|gb\|AAC38212.1\| OorB subunit of 2-oxoglutarate:acceptor oxidoreductase [Helicobacter pylor...	231.0	[0..1]	[273..1]
gi\|71740191, gi\|... - gi\|71839376\|ref\|ZP_00679126.1\| 2-oxoglutarate synthase [Pelobacter propionicus DSM 2379], gi\|7174019...	229.0	[0..1]	[271..1]
gi\|57241285, gi\|... - gi\|57241285\|ref\|ZP_00369232.1\| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein ...	228.0	[0..1]	[273..1]

Back

Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNYDEYLR VDKIPTLWCW GCGDGVILKS IIRTIDALGW KMDDVCLVSG IGCSGRMSSY  60
   61 VNCNTVHTTH GRAVAYATGI KMANPSKHVI VVSGDGDGFA IGGNHTMHAC RRNIDLNFIL 120
  121 VNNFIYGLTN SQTSPTTPNG MWTVTAQWGN IDNQFDPCAL TTAAGASFVA RESVLDPQKL 180
  181 EKVLKEGFSH KGFSFFDVHS NCHINLGRKN KMGEASQMLK WMESRLVSKR QFEAMSPEER 240
  241 VDKFPTGVLK HDTDRKEYCE AYQEIIEKAQ GKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1qgdA
Description:	Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: