YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|254071405
Organism: synthetic construct
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254071405.

Description E-value Query
Range		 Subject
Range
UBXN1_BOVIN - UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1
 5.0E-48 [1..296] [1..296]
UBXN1_MOUSE - UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1
 7.0E-47 [1..297] [1..297]
UBXN1_RAT - UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=3 SV=2
 9.0E-47 [1..297] [1..297]
gi|114638051, gi... - gi|114638051|ref|XP_001155274.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi|114...
 1.0E-46 [1..297] [1..297]
gi|109105736 - gi|109105736|ref|XP_001116331.1| PREDICTED: unknown protein LOC51035 isoform 4 [Macaca mulatta]
 1.0E-46 [1..297] [1..297]
gi|73983806 - gi|73983806|ref|XP_533263.2| PREDICTED: similar to DNA segment, Chr 19, ERATO Doi 721, expressed [Ca...
 7.0E-46 [1..297] [101..396]
gi|284165, gi|189397 - pir||S27965 hypothetical protein - human, gi|189397|gb|AAA36396.1| ORF
 1.0E-44 [1..297] [1..298]

Back

Predicted Domain #1
Region A:
Residues: [1-58] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELTALESL IEMGFPRGRA EKALALTGNQ GIEAAMDWLM EHEDDPDVDE PLETPLGH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2dagA
Description: No description for 2dagA was found.

Predicted Domain #2
Region A:
Residues: [59-177] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILGREPTSSE QGGLEGSGSA AGEGKPALSE EERQEQTKRM LELVAQKQRE REEREEREAL  60
   61 ERERQRRRQG QELSAARQRL QEDEMRRAAE ERRREKAEEL AARQRVREKI ERDKAERAK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.2
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [178-297] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYGGSVGSQP PPVAPEPGPV PSSPSQEPPT KREYDQCRIQ VRLPDGTSLT QTFRAREQLA  60
   61 AVRLYVELHR GEELGGGQDP VQLLSGFPRR AFSEADMERP LQELGLVPSA VLIVAKKCPS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1s3sG
Description: Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 2.77871378503369 bayes_pls_golite062009
small conjugating protein ligase activity 2.06714283858345 bayes_pls_golite062009
binding 1.55392638191535 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.48147454986498 bayes_pls_golite062009
protein binding 1.17197911794381 bayes_pls_golite062009
acid-amino acid ligase activity 1.0818414663245 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.364036714119806 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle