YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238831189, gi...
Organism:	Enterococcus faecalis TUSoD Ef11
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238831189, gi....

Description	E-value	Query Range	Subject Range
gi\|254932465, gi... - gi\|254932465\|ref\|ZP_05265824.1\| transcription antitermination protein NusG [Listeria monocytogenes H... gi\|254825710 - gi\|254825710\|ref\|ZP_05230711.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|225875336, gi... - gi\|226222874\|ref\|YP_002756981.1\| transcription antitermination factor [Listeria monocytogenes Clip81... gi\|217965667, gi... - gi\|217965667\|ref\|YP_002351345.1\| transcription termination/antitermination factor NusG [Listeria mon... gi\|224498908 - gi\|224498908\|ref\|ZP_03667257.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|224502460 - gi\|224502460\|ref\|ZP_03670767.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|255520310 - gi\|255520310\|ref\|ZP_05387547.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|255030086 - gi\|255030086\|ref\|ZP_05302037.1\| transcription antitermination protein NusG [Listeria monocytogenes L... gi\|126941162, gi... - gi\|254900573\|ref\|ZP_05260497.1\| transcription antitermination protein NusG [Listeria monocytogenes J... gi\|255026643 - gi\|255026643\|ref\|ZP_05298629.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|46906479, gi\|... - gi\|46906479\|ref\|YP_012868.1\| transcription antitermination protein NusG [Listeria monocytogenes str.... gi\|153198260, gi... - gi\|254831929\|ref\|ZP_05236584.1\| transcription antitermination protein NusG [Listeria monocytogenes 1... gi\|254991754 - gi\|254991754\|ref\|ZP_05273944.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|16802292 - gi\|16802292\|ref\|NP_463777.1\| transcription antitermination protein NusG [Listeria monocytogenes EGD-... gi\|254872141, gi... - gi\|254872141\|ref\|ZP_05244851.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254913476 - gi\|254913476\|ref\|ZP_05263488.1\| transcription antitermination protein NusG [Listeria monocytogenes J... gi\|47017011, gi\|... - gi\|47094614\|ref\|ZP_00232254.1\| transcription antitermination factor NusG [Listeria monocytogenes str... gi\|254828706, gi... - gi\|254828706\|ref\|ZP_05233393.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254878812 - gi\|254878812\|ref\|ZP_05251522.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|25299620, gi\|... - pir\|\|AG1105 transcription antitermination factor nusG [imported] - Listeria monocytogenes (strain EG... gi\|254937943, gi... - gi\|254937943\|ref\|ZP_05269640.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254853487 - gi\|254853487\|ref\|ZP_05242835.1\| transcription antitermination protein NusG [Listeria monocytogenes F...	224.0	[0..4]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFERNWYV LHTYSGYENK VKANIESRAQ SMGMGDYIFR VVVPEETEKE VKNGKEKEIV  60
   61 HKTFPGYVLV EMIMTDDSWY IVRNTPGVTG FVGSHGAGSK PAPLLQEEIN HILRSIGMST 120
  121 RQSDLEVALG DTVKIIEGAF SGLEGVVTEI DEEKQKLKVN IDMFGRETST ELDFEQVDNI 180
  181 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: