YRC Public Data Repository - Protein Structure Prediction

Protein:	AT12A_ARATH
Organism:	Arabidopsis thaliana
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT12A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|58378556, gi\|... - gi\|58378556\|ref\|XP_308525.2\| AGAP007296-PA [Anopheles gambiae str. PEST], gi\|55245592\|gb\|EAA04308.2\|... AGAP007296-PA, A... - APG12: autophagy related gene\|protein_coding\|2L:45065621:45066154:1\|gene:AGAP007296, autophagy-relat...	150.0	[0..1]	[96..27]
ATG12_RAT - Ubiquitin-like protein ATG12 OS=Rattus norvegicus GN=Atg12 PE=2 SV=1	150.0	[0..3]	[96..45]
ATG12_COCIM - Autophagy-related protein 12 OS=Coccidioides immitis GN=ATG12 PE=3 SV=1 ATG12_COCIM - Ubiquitin-like protein ATG12 OS=Coccidioides immitis (strain RS) GN=ATG12 PE=3 SV=1	149.0	[0..2]	[96..85]
gi\|119569340, gi... - gi\|52632420\|gb\|AAH12266.2\| ATG12 autophagy related 12 homolog (S. cerevisiae) [Homo sapiens], gi\|382...	148.0	[0..3]	[96..91]
gi\|49074064, gi\|... - gi\|71018987\|ref\|XP_759724.1\| hypothetical protein UM03577.1 [Ustilago maydis 521], ref\|XP_401192.1\| ...	148.0	[0..2]	[96..96]
ATG12_MOUSE - Ubiquitin-like protein ATG12 OS=Mus musculus GN=Atg12 PE=1 SV=1	148.0	[0..3]	[96..45]
gi\|73970487 - gi\|73970487\|ref\|XP_531866.2\| PREDICTED: similar to Autophagy protein 12-like (APG12-like) (ATG12) is...	147.0	[0..3]	[96..44]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATESSSPSS VRKVVVHLRA TGGAPILKQS KFKIPGTDKF AKVIDFLRRQ LHSDSLFVYV  60
   61 NSAFSPNPDE SVIDLYNNFG FDGKLVVNYA CSMAWG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1wz3A
Description:	The crystal structure of plant ATG12
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits