YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254696632
Organism:	Brucella abortus bv. 2 str. 86/8/59
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254696632.

Description	E-value	Query Range	Subject Range
gi\|23501119, gi\|... - gi\|23501119\|ref\|NP_697246.1\| transcriptional regulator TenA, putative [Brucella suis 1330], gi\|23346...	233.0	[0..1]	[232..1]
gi\|32416154, gi\|... - gi\|32416154\|ref\|XP_328555.1\| hypothetical protein [Neurospora crassa], gi\|28924762\|gb\|EAA33874.1\| hy... gi\|85109833 - gi\|85109833\|ref\|XP_963110.1\| hypothetical protein [Neurospora crassa OR74A]	222.0	[0..3]	[232..287]
gi\|165872451, gi... - gi\|165872451\|ref\|ZP_02217085.1\| putative transcriptional activator TenA [Bacillus anthracis str. A04... gi\|167635945, gi... - gi\|167635945\|ref\|ZP_02394252.1\| putative transcriptional activator TenA [Bacillus anthracis str. A04... gi\|167510695, gi... - gi\|167641304\|ref\|ZP_02399556.1\| putative transcriptional activator TenA [Bacillus anthracis str. A01... gi\|170666881, gi... - gi\|170689133\|ref\|ZP_02880331.1\| putative transcriptional activator TenA [Bacillus anthracis str. A04... gi\|170126480, gi... - gi\|170708594\|ref\|ZP_02899034.1\| putative transcriptional activator TenA [Bacillus anthracis str. A03... gi\|177654701, gi... - gi\|177654701\|ref\|ZP_02936489.1\| putative transcriptional activator TenA [Bacillus anthracis str. A01... gi\|51978057, gi\|... - gi\|52144588\|ref\|YP_082240.1\| transcriptional regulator of extracellular enzyme [Bacillus cereus E33L... gi\|47501157, gi\|... - gi\|47526009\|ref\|YP_017358.1\| transcriptional activator TenA, putative [Bacillus anthracis str. 'Ames... gi\|49177642, gi\|... - gi\|49183715\|ref\|YP_026967.1\| transcriptional activator TenA, putative [Bacillus anthracis str. Stern... gi\|21398688, gi\|... - gi\|65318151\|ref\|ZP_00391110.1\| COG0819: Putative transcription activator [Bacillus anthracis str. A2... gi\|30254322, gi\|... - gi\|30260873\|ref\|NP_843250.1\| transcriptional activator TenA, putative [Bacillus anthracis str. Ames]... gi\|190560025, gi... - gi\|190568788\|ref\|ZP_03021691.1\| putative transcriptional activator TenA [Bacillus anthracis Tsiankov... gi\|196046699, gi... - gi\|196046699\|ref\|ZP_03113922.1\| putative transcriptional activator TenA [Bacillus cereus 03BB108], g... gi\|254757117 - gi\|254757117\|ref\|ZP_05209145.1\| putative transcriptional activator TenA [Bacillus anthracis str. Aus... gi\|254753203 - gi\|254753203\|ref\|ZP_05205239.1\| putative transcriptional activator TenA [Bacillus anthracis str. Vol... gi\|254739864 - gi\|254739864\|ref\|ZP_05197556.1\| putative transcriptional activator TenA [Bacillus anthracis str. Kru... gi\|254735034 - gi\|254735034\|ref\|ZP_05192745.1\| putative transcriptional activator TenA [Bacillus anthracis str. Wes... gi\|254725861 - gi\|254725861\|ref\|ZP_05187643.1\| putative transcriptional activator TenA [Bacillus anthracis str. A10... gi\|254683074 - gi\|254683074\|ref\|ZP_05146935.1\| putative transcriptional activator TenA [Bacillus anthracis str. CNE... gi\|229266101, gi... - gi\|229601693\|ref\|YP_002865320.1\| putative transcriptional activator TenA [Bacillus anthracis str. A0... gi\|229120373, gi... - gi\|229120373\|ref\|ZP_04249620.1\| Transcriptional activator [Bacillus cereus 95/8201], gi\|228662958\|gb... gi\|228693414, gi... - gi\|229089789\|ref\|ZP_04221044.1\| Transcriptional activator [Bacillus cereus Rock3-42], gi\|228693414\|g... gi\|229022276, gi... - gi\|229022276\|ref\|ZP_04178817.1\| Transcriptional activator [Bacillus cereus AH1272], gi\|228739015\|gb\|... gi\|229016054, gi... - gi\|229016054\|ref\|ZP_04173008.1\| Transcriptional activator [Bacillus cereus AH1273], gi\|228745203\|gb\|... gi\|228815143, gi... - gi\|228944475\|ref\|ZP_04106846.1\| Transcriptional activator [Bacillus thuringiensis serovar monterrey ... gi\|228925912, gi... - gi\|228925912\|ref\|ZP_04088993.1\| Transcriptional activator [Bacillus thuringiensis serovar pondicheri... gi\|228846165, gi... - gi\|228913414\|ref\|ZP_04077045.1\| Transcriptional activator [Bacillus thuringiensis serovar pulsiensis... gi\|227816403, gi... - gi\|227816403\|ref\|YP_002816412.1\| putative transcriptional activator TenA [Bacillus anthracis str. CD... gi\|47558030, gi\|... - gi\|47564657\|ref\|ZP_00235701.1\| transcriptional regulator (tenA) [Bacillus cereus G9241], gi\|47558030... gi\|118476400, gi... - gi\|118476400\|ref\|YP_893551.1\| transcriptional activator [Bacillus thuringiensis str. Al Hakam], gi\|1...	221.0	[0..12]	[229..3]
gi\|29894443, gi\|... - gi\|30018901\|ref\|NP_830532.1\| transcriptional activator tenA [Bacillus cereus ATCC 14579], gi\|2989444...	221.0	[0..12]	[229..3]
gi\|49331834, gi\|... - gi\|49480278\|ref\|YP_034980.1\| transcriptional regulator of extracellular enzyme [Bacillus thuringiens...	220.0	[0..12]	[229..3]
gi\|42779872, gi\|... - gi\|42779872\|ref\|NP_977119.1\| transcriptional activator TenA, putative [Bacillus cereus ATCC 10987], ... gi\|221238536, gi... - gi\|222094478\|ref\|YP_002528538.1\| transcriptional regulator of extracellular enzymes [Bacillus cereus... gi\|217066360, gi... - gi\|217958308\|ref\|YP_002336856.1\| putative transcriptional activator TenA [Bacillus cereus AH187], gi... gi\|206744585, gi... - gi\|206977269\|ref\|ZP_03238167.1\| putative transcriptional activator TenA [Bacillus cereus H3081.97], ...	220.0	[0..12]	[229..3]
gi\|89203244, gi\|... - gi\|89203244\|ref\|ZP_01181932.1\| TENA/THI-4 protein [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	220.0	[0..12]	[228..3]
gi\|228899412, gi... - gi\|228899412\|ref\|ZP_04063669.1\| Transcriptional activator [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|218895781, gi... - gi\|218895781\|ref\|YP_002444192.1\| putative transcriptional activator TenA [Bacillus cereus G9842], gi... gi\|75762115, gi\|... - gi\|75762115\|ref\|ZP_00742018.1\| Transcriptional activator tenA [Bacillus thuringiensis serovar israel...	220.0	[0..12]	[229..3]
gi\|46116572, gi\|... - gi\|46116572\|ref\|XP_384304.1\| hypothetical protein FG04128.1 [Gibberella zeae PH-1], gi\|42549487\|gb\|E...	216.0	[0..3]	[226..288]
gi\|163938647, gi... - gi\|89207107\|ref\|ZP_01185655.1\| TENA/THI-4 protein [Bacillus weihenstephanensis KBAB4], gi\|89155009\|g...	216.0	[0..12]	[229..3]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPQPHYSS ELFTRLRTAT LADWKPYIEH DFVRGLGDGT LPKAAFLHYL RQDYVYLHHY  60
   61 ARAFALGVVK ANTSQETRLC ADIMHSLTHM ELPLHVRICA REGISEDALY ATREEPENLA 120
  121 YTRYVLDCGQ AGDFLDLLTA LVPCAHGYGE IGLNLAATAR AGTPYQEWID TYAGSEYQDM 180
  181 CRTVGRLFDQ AARDRIGDDF EKSPRWPKLC QIFATASRLE ADFWSMGLKA GS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1to9A
Description:	Crystal structure of THI-4 protein from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.91081735217593	bayes_pls_golite062009
catalytic activity	0.846500584774474	bayes_pls_golite062009
binding	0.463801341295592	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: