YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|242079123, gi...
Organism:	Sorghum bicolor
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|242079123, gi....

Description	E-value	Query Range	Subject Range
gi\|149721195 - gi\|149721195\|ref\|XP_001494862.1\| PREDICTED: similar to Thioredoxin-like protein 4A (Thioredoxin-like... gi\|149627057 - gi\|149627057\|ref\|XP_001507748.1\| PREDICTED: similar to Dim1p homolog [Ornithorhynchus anatinus] gi\|542145620\|ref... - PREDICTED: thioredoxin-like protein 4A [Zonotrichia albicollis] tr\|M3VV07\|M3VV07... - Thioredoxin like 4A OS=Felis catus GN=TXNL4A PE=4 SV=1 gi\|118086300, gi... - gi\|50733538\|ref\|XP_418903.1\| PREDICTED: similar to Dim1p homolog isoform 2 [Gallus gallus], gi\|11808... gi\|73945343 - gi\|73945343\|ref\|XP_533363.2\| PREDICTED: similar to dim1 isoform 1 [Canis familiaris] gi\|126321922 - gi\|126321922\|ref\|XP_001366433.1\| PREDICTED: similar to Dim1p homolog [Monodelphis domestica] gi\|61831228 - gi\|61831228\|ref\|XP_615554.1\| PREDICTED: similar to dim1 isoform 1 [Bos taurus] gi\|194033756 - gi\|194033756\|ref\|XP_001924886.1\| PREDICTED: similar to Thioredoxin-like protein 4A (Thioredoxin-like...	176.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLLPHLHS GWAVDQAILA EEERLVIIRF GHDWDETCMQ MDEVLAAVAE TIKNFAVIYL  60
   61 VDITEVPDFN TMYELYDPST VMFFFRNKHI MIDLGTGNNN KINWALKDKQ EFIDIVETVY 120
  121 RGARKGRGLV IAPKDYSTKY RY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1qgvA
Description:	spliceosomal protein U5-15Kd
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	5.14545280785816	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
transcription regulator activity	1.20376609684075	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: