YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|254731083
Organism: Brucella abortus bv. 4 str. 292
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254731083.

Description E-value Query
Range		 Subject
Range
RL19_AGRFC - 50S ribosomal protein L19 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplS PE=3 SV=1
gi|25295335, gi|... - gi|25295337|pir||F97683 50S ribosomal protein L19 [imported] - Agrobacterium tumefaciens (strain C58...
 186.0 [0..1] [145..1]
RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti (strain 1021) GN=rplS PE=3 SV=1
RL19_RHIME - 50S ribosomal protein L19 OS=Rhizobium meliloti GN=rplS PE=3 SV=1
 182.0 [0..3] [145..2]
RL19_RHIEC - 50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1
 182.0 [0..3] [145..2]
RL19_SINMW - 50S ribosomal protein L19 OS=Sinorhizobium medicae (strain WSM419) GN=rplS PE=3 SV=1
 181.0 [0..3] [145..2]
RL19_RHIL3 - 50S ribosomal protein L19 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplS PE=3 SV=1
 180.0 [0..3] [145..2]
RL19_CHESB - 50S ribosomal protein L19 OS=Chelativorans sp. (strain BNC1) GN=rplS PE=3 SV=1
 180.0 [0..3] [139..2]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479...
RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1
 178.0 [0..3] [124..2]
rplS, L19 - rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297
RL19_RHOPT - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplS PE=3 SV=1
RL19_RHOPA - 50S ribosomal protein L19 OS=Rhodopseudomonas palustris GN=rplS PE=1 SV=1
 177.0 [0..3] [130..2]
RL19_BARHE - 50S ribosomal protein L19 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rplS...
RL19_BARHE - 50S ribosomal protein L19 OS=Bartonella henselae GN=rplS PE=3 SV=1
 176.0 [0..3] [143..2]
RL19_RHORT - 50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...
gi|48765003 - ref|ZP_00269554.1| COG0335: Ribosomal protein L19 [Rhodospirillum rubrum]
 176.0 [0..3] [143..2]

Back

Predicted Domain #1
Region A:
Residues: [1-145] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIIRQLEA EQAAKIEEKR KLPDFQPGDT VRVQVRVTEG TRTRVQAYEG VCIARSGAGL  60
   61 NENFTVRKIS YGEGVERVFP VYSPIVEGVE VVRRGKVRRA KLYYLRGLTG KAARIAEKKD 120
  121 NRTKAERAAD KLAAAKAEAA KTAAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.30103
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
binding 1.06497983674709 bayes_pls_golite062009
nucleic acid binding 0.694156012779703 bayes_pls_golite062009
transcription regulator activity 0.531244221462633 bayes_pls_golite062009
protein binding 0.403456843184132 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
DNA binding 0.119656223173058 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle