YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229840560, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229840560, gi....

Description	E-value	Query Range	Subject Range
gi\|22127387, gi\|... - gi\|22127387\|ref\|NP_670810.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Yersinia pestis...	6.0E-53	[1..275]	[11..285]
gi\|145597758, gi... - gi\|145597758\|ref\|YP_001161834.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Yersinia pe... gi\|77636086, gi\|... - gi\|77636086\|ref\|ZP_00798163.1\| COG1409: Predicted phosphohydrolases [Yersinia pestis Angola], gi\|162...	2.0E-52	[1..275]	[25..299]
Q665W3\|Q665W3_YERPS - Icc protein homologue - Yersinia pseudotuberculosis gi\|77630402, gi\|... - gi\|77630402\|ref\|ZP_00792988.1\| COG1409: Predicted phosphohydrolases [Yersinia pseudotuberculosis IP ... gi\|51590977, gi\|... - gi\|51597695\|ref\|YP_071886.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Yersinia pseudo... gi\|186896836, gi... - gi\|186896836\|ref\|YP_001873948.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Yersinia ps...	3.0E-52	[1..275]	[25..299]
gi\|213021680 - gi\|213021680\|ref\|ZP_03336127.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|206710245, gi... - gi\|207858442\|ref\|YP_002245093.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ... gi\|213419640 - gi\|213419640\|ref\|ZP_03352706.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|213052524 - gi\|213052524\|ref\|ZP_03345402.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|198242752, gi... - gi\|198242752\|ref\|YP_002217163.1\| protein icc [Salmonella enterica subsp. enterica serovar Dublin str... gi\|29139079, gi\|... - gi\|29143445\|ref\|NP_806787.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ente... gi\|16761958 - gi\|16761958\|ref\|NP_457575.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ente... gi\|214001842 - gi\|214001842\|ref\|ZP_03412577.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|25752530, gi\|... - gi\|25752530\|pir\|\|AG0889 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) cpdA-type STY3361 [s... gi\|213615570 - gi\|213615570\|ref\|ZP_03371396.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|213424343 - gi\|213424343\|ref\|ZP_03357167.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|213855669 - gi\|213855669\|ref\|ZP_03383909.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|213645892 - gi\|213645892\|ref\|ZP_03375945.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e...	5.0E-52	[1..275]	[1..275]
gi\|197364053, gi... - gi\|197364053\|ref\|YP_002143690.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ... gi\|56415124, gi\|... - gi\|56415124\|ref\|YP_152199.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ente...	5.0E-52	[1..275]	[1..275]
gi\|204928376, gi... - gi\|204928376\|ref\|ZP_03219576.1\| protein icc [Salmonella enterica subsp. enterica serovar Javiana str... gi\|224584984, gi... - gi\|224584984\|ref\|YP_002638783.1\| hypothetical protein SPC_3257 [Salmonella enterica subsp. enterica ... gi\|197264530, gi... - gi\|197264530\|ref\|ZP_03164604.1\| protein icc [Salmonella enterica subsp. enterica serovar Saintpaul s... gi\|199604271, gi... - gi\|200387173\|ref\|ZP_03213785.1\| protein icc [Salmonella enterica subsp. enterica serovar Virchow str... gi\|194711140, gi... - gi\|194735638\|ref\|YP_002116138.1\| protein icc [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|197215069, gi... - gi\|197251366\|ref\|YP_002148110.1\| protein icc [Salmonella enterica subsp. enterica serovar Agona str.... gi\|194404248, gi... - gi\|194445585\|ref\|YP_002042450.1\| protein icc [Salmonella enterica subsp. enterica serovar Newport st... gi\|194447552, gi... - gi\|194447552\|ref\|YP_002047180.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ... gi\|195633561, gi... - gi\|195633561\|gb\|EDX51975.1\| protein icc [Salmonella enterica subsp. enterica serovar Newport str. SL... gi\|205343528, gi... - gi\|205343528\|gb\|EDZ30292.1\| protein icc [Salmonella enterica subsp. enterica serovar Weltevreden str... gi\|238909984 - gi\|238909984\|ref\|ZP_04653821.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella e... gi\|205337766, gi... - gi\|205337766\|gb\|EDZ24530.1\| protein icc [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|205348326, gi... - gi\|205348326\|gb\|EDZ34957.1\| protein icc [Salmonella enterica subsp. enterica serovar Hadar str. RI_0... gi\|205333904, gi... - gi\|205333904\|gb\|EDZ20668.1\| protein icc [Salmonella enterica subsp. enterica serovar Kentucky str. C... gi\|168238138, gi... - gi\|197288971\|gb\|EDY28342.1\| protein icc [Salmonella enterica subsp. enterica serovar Schwarzengrund ... gi\|205323316, gi... - gi\|205323316\|gb\|EDZ11155.1\| protein icc [Salmonella enterica subsp. enterica serovar Saintpaul str. ... gi\|205331275, gi... - gi\|205331275\|gb\|EDZ18039.1\| protein icc [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|161365536, gi... - gi\|161616172\|ref\|YP_001590137.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ... lcl\|NC_016856.1_... - [gene=icc] [protein=cyclic 3',5'-adenosine monophosphate phosphodiesterase] [protein_id=YP_005239355... gi\|16766483, gi\|... - gi\|16766483\|ref\|NP_462098.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella typh... gi\|62129330, gi\|... - gi\|62181697\|ref\|YP_218114.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Salmonella ente...	6.0E-52	[1..275]	[1..275]
gi\|37527807, gi\|... - gi\|37527807\|ref\|NP_931152.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Photorhabdus lu...	2.0E-50	[1..275]	[1..279]
gi\|170521114, gi... - gi\|170683396\|ref\|YP_001745306.1\| protein icc [Escherichia coli SMS-3-5], gi\|170521114\|gb\|ACB19292.1\|... gi\|218366886, gi... - gi\|218560117\|ref\|YP_002393030.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|190907179, gi... - gi\|75240501\|ref\|ZP_00724429.1\| COG1409: Predicted phosphohydrolases [Escherichia coli F11], gi\|19117... gi\|26249609, gi\|... - gi\|26249609\|ref\|NP_755649.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia col... gi\|91074032, gi\|... - gi\|91212458\|ref\|YP_542444.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia col... gi\|227835147, gi... - gi\|227887751\|ref\|ZP_04005556.1\| phosphohydrolase [Escherichia coli 83972], gi\|227835147\|gb\|EEJ45613.... gi\|226899249, gi... - gi\|237706209\|ref\|ZP_04536690.1\| icc protein [Escherichia sp. 3_2_53FAA], gi\|226899249\|gb\|EEH85508.1\|...	1.0E-49	[1..275]	[1..275]
gi\|77959532 - gi\|77959532\|ref\|ZP_00823551.1\| COG1409: Predicted phosphohydrolases [Yersinia bercovieri ATCC 43970]	2.0E-49	[9..275]	[1..267]
EG12187 - 3',5' cAMP phosphodiesterase / 3',5' cAMP phosphodiesterase; mutants have elevated cAMP levels ICC_ECOLI - Protein icc - Escherichia coli gi\|13363393, gi\|... - gi\|15833174\|ref\|NP_311947.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia col... gi\|110344870, gi... - gi\|110643278\|ref\|YP_671008.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia co... gi\|168747457, gi... - gi\|188017923\|gb\|EDU56045.1\| protein icc [Escherichia coli O157:H7 str. EC4113], gi\|168747457\|ref\|ZP_... CPDA_ECO57 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA OS=Escherichia coli O157:H7 GN=cpdA PE=3... gi\|15803579, gi\|... - gi\|15803579\|ref\|NP_289612.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia col... EG12187 - 3',5' cAMP phosphodiesterase / 3',5' cAMP phosphodiesterase; mutants have elevated cAMP levels gi\|195937179 - gi\|195937179\|ref\|ZP_03082561.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia ... gi\|194419999, gi... - gi\|194431643\|ref\|ZP_03063934.1\| protein icc [Shigella dysenteriae 1012], gi\|194419999\|gb\|EDX36077.1\|... gi\|208735025, gi... - gi\|208813748\|ref\|ZP_03255077.1\| protein icc [Escherichia coli O157:H7 str. EC4045], gi\|208735025\|gb\|... gi\|208726709, gi... - gi\|208806908\|ref\|ZP_03249245.1\| protein icc [Escherichia coli O157:H7 str. EC4206], gi\|208726709\|gb\|... gi\|209157317, gi... - gi\|209395917\|ref\|YP_002272511.1\| protein icc [Escherichia coli O157:H7 str. EC4115], gi\|209157317\|gb... gi\|208819915, gi... - gi\|208819915\|ref\|ZP_03260235.1\| protein icc [Escherichia coli O157:H7 str. EC4042], gi\|208740038\|gb\|... gi\|217320214, gi... - gi\|217327847\|ref\|ZP_03443930.1\| protein icc [Escherichia coli O157:H7 str. TW14588], gi\|217320214\|gb... gi\|209913763, gi... - gi\|209920504\|ref\|YP_002294588.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|89109802, gi\|... - gi\|89109802\|ref\|AP_003582.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia col... gi\|189369408, gi... - gi\|189369408\|gb\|EDU87824.1\| protein icc [Escherichia coli O157:H7 str. EC4501], gi\|168760194\|ref\|ZP_... gi\|189358673, gi... - gi\|189358673\|gb\|EDU77092.1\| protein icc [Escherichia coli O157:H7 str. EC4401], gi\|168754003\|ref\|ZP_... gi\|82778359, gi\|... - gi\|82778359\|ref\|YP_404708.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Shigella dysent... gi\|168773310, gi... - gi\|187770882\|gb\|EDU34726.1\| protein icc [Escherichia coli O157:H7 str. EC4196], gi\|168773310\|ref\|ZP_... gi\|81246700, gi\|... - gi\|82545289\|ref\|YP_409236.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Shigella boydii... gi\|189363736, gi... - gi\|189363736\|gb\|EDU82155.1\| protein icc [Escherichia coli O157:H7 str. EC4486], gi\|168767056\|ref\|ZP_... gi\|168785907, gi... - gi\|189373947\|gb\|EDU92363.1\| protein icc [Escherichia coli O157:H7 str. EC869], gi\|168785907\|ref\|ZP_0... gi\|189000573, gi... - gi\|189000573\|gb\|EDU69559.1\| protein icc [Escherichia coli O157:H7 str. EC4076], gi\|168781909\|ref\|ZP_... gi\|169890410, gi... - gi\|170082575\|ref\|YP_001731895.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|189379620, gi... - gi\|189379620\|gb\|EDU98036.1\| protein icc [Escherichia coli O157:H7 str. EC508], gi\|168797625\|ref\|ZP_0... gi\|194426496, gi... - gi\|75212330\|ref\|ZP_00712354.1\| COG1409: Predicted phosphohydrolases [Escherichia coli B171], gi\|1944... gi\|75229288, gi\|... - gi\|75229288\|ref\|ZP_00715847.1\| COG1409: Predicted phosphohydrolases [Escherichia coli B7A], gi\|19116... gi\|75187847, gi\|... - gi\|75187847\|ref\|ZP_00701114.1\| COG1409: Predicted phosphohydrolases [Escherichia coli E24377A], gi\|1... gi\|75196989, gi\|... - gi\|75196989\|ref\|ZP_00707059.1\| COG1409: Predicted phosphohydrolases [Escherichia coli HS], gi\|157162... gi\|188490451, gi... - gi\|75515175\|ref\|ZP_00737359.1\| COG1409: Predicted phosphohydrolases [Escherichia coli 53638], gi\|188... gi\|73857047, gi\|... - gi\|74313570\|ref\|YP_311989.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Shigella sonnei... gi\|75239392, gi\|... - gi\|75239392\|ref\|ZP_00723363.1\| COG1409: Predicted phosphohydrolases [Escherichia coli E110019], gi\|1... gi\|193062208, gi... - gi\|75259970\|ref\|ZP_00731248.1\| COG1409: Predicted phosphohydrolases [Escherichia coli E22], gi\|19306... gi\|218696738, gi... - gi\|218696738\|ref\|YP_002404405.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|218555602, gi... - gi\|218555602\|ref\|YP_002388515.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|218433756, gi... - gi\|218706659\|ref\|YP_002414178.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|218371792, gi... - gi\|218701806\|ref\|YP_002409435.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|187430885, gi... - gi\|75178932\|ref\|ZP_00698968.1\| COG1409: Predicted phosphohydrolases [Shigella boydii BS512], gi\|1877... gi\|238902145, gi... - gi\|238902145\|ref\|YP_002927941.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia... gi\|226839825, gi... - gi\|254038201\|ref\|ZP_04872259.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia ... gi\|254794989, gi... - gi\|254794989\|ref\|YP_003079826.1\| cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia...	2.0E-49	[1..275]	[1..275]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLFKLPMA SGARVRILQI TDTHLFAGEH ETLLGVNTFH SYRAVLDAII AEQHPFDLVV  60
   61 ATGDLAQDHS VAAYQNFAKG ISRLPVPCVW LPGNHDFQPA MFDALAEAGI APSKQVLAGE 120
  121 HWQILLLDSQ VFGVPYGELS DYQLEWMERC LIAYPERYTL ILLHHHPMPS GCTWLDQHSL 180
  181 RNAHMLAAIL TRYPRVTTLL CGHIHQDLDL DWYGKRLLAS PSTCVQFKPH CTNFTLDAVA 240
  241 PGWRYLDLLP DGGLETEVHR LDSDEFCPDM DSDGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	2dxlA
Description:	No description for 2dxlA was found.

Predicted functions:

Term	Confidence	Notes
phosphoprotein phosphatase activity	6.45938850813828	bayes_pls_golite062009
phosphatase activity	6.05839828647676	bayes_pls_golite062009
phosphoric ester hydrolase activity	6.05508122107559	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	5.46891274080274	bayes_pls_golite062009
protein serine/threonine phosphatase activity	4.55926485636214	bayes_pls_golite062009
hydrolase activity	4.19812575932308	bayes_pls_golite062009
catalytic activity	1.76896578956606	bayes_pls_golite062009
binding	0.105761960845815	bayes_pls_golite062009
calcium-dependent protein serine/threonine phosphatase activity	0.0863772620665402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: