YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225618437, gi...
Organism:	Brucella ceti str. Cudo
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225618437, gi....

Description	E-value	Query Range	Subject Range
gi\|229328615, gi... - gi\|229500498\|ref\|ZP_04394159.1\| translation initiation factor IF-1 [Geobacillus sp. Y412MC52], gi\|22... gi\|221089345, gi... - gi\|221089345\|ref\|ZP_03558865.1\| translation initiation factor IF-1 [Geobacillus sp. Y412MC61], gi\|22... IF1_GEOKA - Translation initiation factor IF-1 OS=Geobacillus kaustophilus GN=infA PE=3 SV=1 IF1_GEOKA - Translation initiation factor IF-1 OS=Geobacillus kaustophilus (strain HTA426) GN=infA PE=3 SV=1	127.0	[0..30]	[101..1]
gi\|111063791 - gi\|111063791\|gb\|EAT84911.1\| hypothetical protein SNOG_07445 [Phaeosphaeria nodorum SN15]	127.0	[0..8]	[100..1]
gi\|82947279, gi\|... - gi\|83312438\|ref\|YP_422702.1\| translation initiation factor 1 [Magnetospirillum magneticum AMB-1], gi...	126.0	[0..30]	[101..57]
gi\|88932100, gi\|... - gi\|88932100\|ref\|ZP_01137792.1\| Translation initiation factor IF-1 [Acidothermus cellulolyticus 11B],...	126.0	[0..11]	[101..51]
IF1_OCEIH - Translation initiation factor IF-1 OS=Oceanobacillus iheyensis GN=infA PE=3 SV=1 IF1_OCEIH - Translation initiation factor IF-1 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC ...	125.0	[0..30]	[101..1]
IF1_RUBXD - Translation initiation factor IF-1 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=inf...	125.0	[0..30]	[101..1]
IF1_BACLD - Translation initiation factor IF-1 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 ...	125.0	[0..30]	[101..1]
gi\|17738885, gi\|... - gi\|17934446\|ref\|NP_531236.1\| translation initiation factor IF-1 [Agrobacterium tumefaciens str. C58]... gi\|25299543 - gi\|25299543\|pir\|\|AB2642 translation initiation factor IF-1 [imported] - Agrobacterium tumefaciens (s...	125.0	[0..13]	[101..12]
eIF-1A-PA, eIF-1... - The gene Eukaryotic initiation factor 1A is referred to in FlyBase by the symbol Dmel\eIF-1A (CG8053... gi\|195449988, gi... - gi\|195449988\|ref\|XP_002072314.1\| GK22392 [Drosophila willistoni], gi\|194168399\|gb\|EDW83300.1\| GK2239... gi\|195569935, gi... - gi\|195569935\|ref\|XP_002102964.1\| GD19223 [Drosophila simulans], gi\|194198891\|gb\|EDX12467.1\| GD19223 ... gi\|220948970, gi... - gi\|220957690\|gb\|ACL91388.1\| eIF-1A-PA [synthetic construct], gi\|220948970\|gb\|ACL87028.1\| eIF-1A-PA [... gi\|194764537, gi... - gi\|194764537\|ref\|XP_001964385.1\| GF23078 [Drosophila ananassae], gi\|190614657\|gb\|EDV30181.1\| GF23078... gi\|190651367, gi... - gi\|194900238\|ref\|XP_001979664.1\| GG22826 [Drosophila erecta], gi\|190651367\|gb\|EDV48622.1\| GG22826 [D... gi\|38047995, gi\|... - gi\|38047995\|gb\|AAR09900.1\| similar to Drosophila melanogaster eIF-1A [Drosophila yakuba], gi\|1954975... gi\|193899766, gi... - gi\|195062888\|ref\|XP_001996271.1\| GH22399 [Drosophila grimshawi], gi\|193899766\|gb\|EDV98632.1\| GH22399... gi\|54639054, gi\|... - gi\|54639054\|gb\|EAL28456.1\| GA20792 [Drosophila pseudoobscura pseudoobscura], gi\|125776545\|ref\|XP_001... gi\|195109642, gi... - gi\|195109642\|ref\|XP_001999392.1\| GI24484 [Drosophila mojavensis], gi\|193915986\|gb\|EDW14853.1\| GI2448... gi\|125776545\|ref... - GA20792-PA [Drosophila pseudoobscura], GA20792 [Drosophila pseudoobscura pseudoobscura] gi\|194112158, gi... - gi\|195152353\|ref\|XP_002017101.1\| GL21704 [Drosophila persimilis], gi\|194112158\|gb\|EDW34201.1\| GL2170... gi\|194122588, gi... - gi\|195348897\|ref\|XP_002040983.1\| GM15296 [Drosophila sechellia], gi\|194122588\|gb\|EDW44631.1\| GM15296... gi\|194152697, gi... - gi\|195391928\|ref\|XP_002054611.1\| GJ24550 [Drosophila virilis], gi\|194152697\|gb\|EDW68131.1\| GJ24550 [...	125.0	[0..8]	[100..1]
gi\|25027124, gi\|... - gi\|25027124\|ref\|NP_737178.1\| translation initiation factor IF-1 [Corynebacterium efficiens YS-314], ...	125.0	[0..26]	[101..44]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNHIGSAQ IKGRSFYSAA FIKERNRYRM AKEEVLEFPG VVTELLPNAM FRVKLENEHE  60
   61 IIAHTAGRMR KNRIRVLAGD KVLVEMTPYD LTKGRITYRF K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1ah9A
Description:	THE STRUCTURE OF THE TRANSLATIONAL INITIATION FACTOR IF1 FROM ESCHERICHIA COLI, NMR, 19 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation initiation factor activity	3.7577199572893	bayes_pls_golite062009
nucleic acid binding	1.65948797337693	bayes_pls_golite062009
structural constituent of ribosome	1.48826676464117	bayes_pls_golite062009
structural molecule activity	1.20191382777151	bayes_pls_golite062009
binding	0.902189695502298	bayes_pls_golite062009
DNA binding	0.9001707539121	bayes_pls_golite062009
translation regulator activity	0.75912526777056	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.71309127606641	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: