YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228704497, gi...
Organism:	Bacillus cereus Rock4-2
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228704497, gi....

Description	E-value	Query Range	Subject Range
MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus (strain HTA426) GN=mgsA PE=3 SV=1 MGSA_GEOKA - Methylglyoxal synthase OS=Geobacillus kaustophilus GN=mgsA PE=3 SV=1	153.0	[0..1]	[131..1]
MGSA_CALBD - Methylglyoxal synthase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=... MGSA_CALS8 - Methylglyoxal synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T ...	151.0	[0..1]	[130..1]
gi\|89085453, gi\|... - gi\|89099895\|ref\|ZP_01172767.1\| methylglyoxal synthase [Bacillus sp. NRRL B-14911], gi\|89085453\|gb\|EA...	148.0	[0..1]	[131..2]
gi\|228617054, gi... - gi\|229166480\|ref\|ZP_04294236.1\| Methylglyoxal synthase [Bacillus cereus AH621], gi\|228617054\|gb\|EEK7... gi\|228651148, gi... - gi\|229132442\|ref\|ZP_04261296.1\| Methylglyoxal synthase [Bacillus cereus BDRD-ST196], gi\|228651148\|gb... MGSA_BACWK - Methylglyoxal synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mgsA PE=3 SV=1 gi\|229016890, gi... - gi\|229016890\|ref\|ZP_04173818.1\| Methylglyoxal synthase [Bacillus cereus AH1273], gi\|228744451\|gb\|EEL... gi\|228750343, gi... - gi\|229010943\|ref\|ZP_04168139.1\| Methylglyoxal synthase [Bacillus mycoides DSM 2048], gi\|228750343\|gb... gi\|229058270, gi... - gi\|229058270\|ref\|ZP_04196657.1\| Methylglyoxal synthase [Bacillus cereus AH603], gi\|228720041\|gb\|EEL7... gi\|228738242, gi... - gi\|229023096\|ref\|ZP_04179610.1\| Methylglyoxal synthase [Bacillus cereus AH1272], gi\|228738242\|gb\|EEL...	147.0	[0..1]	[131..1]
gi\|167531328, gi... - gi\|167633290\|ref\|ZP_02391615.1\| methylglyoxal synthase [Bacillus anthracis str. A0442], gi\|167531328... gi\|165869294, gi... - gi\|165869294\|ref\|ZP_02213953.1\| methylglyoxal synthase [Bacillus anthracis str. A0488], gi\|164714734... gi\|170686194, gi... - gi\|170686194\|ref\|ZP_02877416.1\| methylglyoxal synthase [Bacillus anthracis str. A0465], gi\|170669891... gi\|167639077, gi... - gi\|167639077\|ref\|ZP_02397350.1\| methylglyoxal synthase [Bacillus anthracis str. A0193], gi\|167512867... gi\|177650539, gi... - gi\|177650539\|ref\|ZP_02933506.1\| methylglyoxal synthase [Bacillus anthracis str. A0174], gi\|172083683... gi\|170128591, gi... - gi\|170706493\|ref\|ZP_02896953.1\| methylglyoxal synthase [Bacillus anthracis str. A0389], gi\|170128591... gi\|190568681, gi... - gi\|190568681\|ref\|ZP_03021586.1\| methylglyoxal synthase [Bacillus anthracis Tsiankovskii-I], gi\|19056... MGSA_BACAN - Methylglyoxal synthase OS=Bacillus anthracis GN=mgsA PE=3 SV=1 MGSA_BACAC - Methylglyoxal synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=mgsA PE=3 SV=1 gi\|49184460, gi\|... - gi\|49184460\|ref\|YP_027712.1\| methylglyoxal synthase [Bacillus anthracis str. Sterne], gi\|49178387\|gb... MGSA_BACAA - Methylglyoxal synthase OS=Bacillus anthracis (strain A0248) GN=mgsA PE=3 SV=1 gi\|47526829, gi\|... - gi\|47526829\|ref\|YP_018178.1\| methylglyoxal synthase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47... gi\|254683121 - gi\|254683121\|ref\|ZP_05146982.1\| methylglyoxal synthase [Bacillus anthracis str. CNEVA-9066] gi\|30261629, gi\|... - gi\|30261629\|ref\|NP_844006.1\| methylglyoxal synthase [Bacillus anthracis str. Ames], gi\|30255857\|gb\|A... gi\|254723709 - gi\|254723709\|ref\|ZP_05185495.1\| methylglyoxal synthase [Bacillus anthracis str. A1055] gi\|65318898, gi\|... - gi\|65318898\|ref\|ZP_00391857.1\| COG1803: Methylglyoxal synthase [Bacillus anthracis str. A2012], ref\|... gi\|254734469 - gi\|254734469\|ref\|ZP_05192181.1\| methylglyoxal synthase [Bacillus anthracis str. Western North Americ... gi\|254740881 - gi\|254740881\|ref\|ZP_05198569.1\| methylglyoxal synthase [Bacillus anthracis str. Kruger B] gi\|254755119 - gi\|254755119\|ref\|ZP_05207153.1\| methylglyoxal synthase [Bacillus anthracis str. Vollum] gi\|254759656 - gi\|254759656\|ref\|ZP_05211680.1\| methylglyoxal synthase [Bacillus anthracis str. Australia 94]	147.0	[0..1]	[131..1]
MGSA_BACC3 - Methylglyoxal synthase OS=Bacillus cereus (strain 03BB102) GN=mgsA PE=3 SV=1 MGSA_BACHK - Methylglyoxal synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=mgsA PE=3 SV=1 gi\|228814467, gi... - gi\|228945232\|ref\|ZP_04107588.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar monterrey BGS... MGSA_BACCZ - Methylglyoxal synthase OS=Bacillus cereus (strain ZK / E33L) GN=mgsA PE=3 SV=1 gi\|228692738, gi... - gi\|229090595\|ref\|ZP_04221829.1\| Methylglyoxal synthase [Bacillus cereus Rock3-42], gi\|228692738\|gb\|E... gi\|228926663, gi... - gi\|228926663\|ref\|ZP_04089732.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar pondicheriens... MGSA_BACHK - Methylglyoxal synthase OS=Bacillus thuringiensis subsp. konkukian GN=mgsA PE=3 SV=1 gi\|228826724, gi... - gi\|228932921\|ref\|ZP_04095786.1\| Methylglyoxal synthase [Bacillus thuringiensis serovar andalousiensi... gi\|229195834, gi... - gi\|229195834\|ref\|ZP_04322593.1\| Methylglyoxal synthase [Bacillus cereus m1293], gi\|228587607\|gb\|EEK4... MGSA_BACAH - Methylglyoxal synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=mgsA PE=3 SV=1 MGSA_BACC0 - Methylglyoxal synthase OS=Bacillus cereus (strain AH820) GN=mgsA PE=3 SV=1 gi\|229121175, gi... - gi\|229121175\|ref\|ZP_04250412.1\| Methylglyoxal synthase [Bacillus cereus 95/8201], gi\|228662294\|gb\|EE... gi\|228599676, gi... - gi\|229183827\|ref\|ZP_04311044.1\| Methylglyoxal synthase [Bacillus cereus BGSC 6E1], gi\|228599676\|gb\|E... gi\|196033385, gi... - gi\|196033385\|ref\|ZP_03100797.1\| methylglyoxal synthase [Bacillus cereus W], gi\|195993819\|gb\|EDX57775... gi\|196022551, gi... - gi\|196046618\|ref\|ZP_03113842.1\| methylglyoxal synthase [Bacillus cereus 03BB108], gi\|196022551\|gb\|ED... gi\|196030282, gi... - gi\|196039137\|ref\|ZP_03106444.1\| methylglyoxal synthase [Bacillus cereus NVH0597-99], gi\|196030282\|gb...	146.0	[0..1]	[131..1]
MGSA_OCEIH - Methylglyoxal synthase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE83... MGSA_OCEIH - Methylglyoxal synthase OS=Oceanobacillus iheyensis GN=mgsA PE=3 SV=1	145.0	[0..1]	[131..1]
gi\|228656546, gi... - gi\|229126946\|ref\|ZP_04255957.1\| Methylglyoxal synthase [Bacillus cereus BDRD-Cer4], gi\|228656546\|gb\|... MGSA_BACCR - Methylglyoxal synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM...	144.0	[0..1]	[131..1]
MGSA_THEPX - Methylglyoxal synthase OS=Thermoanaerobacter sp. (strain X514) GN=mgsA PE=3 SV=1 gi\|241884299, gi... - gi\|241903388\|ref\|ZP_04788113.1\| methylglyoxal synthase [Thermoanaerobacter brockii subsp. finnii Ako... gi\|242231406, gi... - gi\|242257090\|ref\|ZP_04801966.1\| methylglyoxal synthase [Thermoanaerobacter sp. X513], gi\|242231406\|g... MGSA_THEP3 - Methylglyoxal synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mgsA PE=3...	143.0	[0..1]	[129..1]
gi\|88775085, gi\|... - gi\|88793571\|ref\|ZP_01109285.1\| methylglyoxal synthase [Alteromonas macleodii 'Deep ecotype'], gi\|887...	142.0	[0..1]	[130..4]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIALIAHDK KKNDMVSFAY AYKPIFEQHE LFATGTTGLR IMEATGLVVT RYQSGPLGGD  60
   61 QEIGAMIAKN DLDMVIFFRD PLTAQPHEPD VNALLRLCDV YAIPLATNMA SAEMLMHALE 120
  121 RGDLDYRKLR K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: