YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238863682, gi...
Organism:	Escherichia coli BW2952
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238863682, gi....

Description	E-value	Query Range	Subject Range
gi\|218367567, gi... - gi\|218560798\|ref\|YP_002393711.1\| transcriptional antiterminator BglG [Escherichia coli S88], gi\|2183... gi\|115515120, gi... - gi\|117625996\|ref\|YP_859319.1\| transcriptional antiterminator BglG [Escherichia coli APEC O1], gi\|115...	234.0	[0..1]	[278..1]
gi\|253975576, gi... - gi\|254163675\|ref\|YP_003046783.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... gi\|194435709, gi... - gi\|83588412\|ref\|ZP_00927036.1\| COG3711: Transcriptional antiterminator [Escherichia coli 101-1], gi\|... gi\|254290425, gi... - gi\|254290425\|ref\|YP_003056173.1\| transcriptional antiterminator of the bgl operon [Escherichia coli ... gi\|251786988, gi... - gi\|251786988\|ref\|YP_003001292.1\| hypothetical protein B21_03551 [Escherichia coli BL21], gi\|24237926...	234.0	[0..1]	[278..1]
gi\|193063836, gi... - gi\|75258262\|ref\|ZP_00729710.1\| COG3711: Transcriptional antiterminator [Escherichia coli E22], gi\|19... gi\|75210667, gi\|... - gi\|75210667\|ref\|ZP_00710808.1\| COG3711: Transcriptional antiterminator [Escherichia coli B171], gi\|1...	234.0	[0..1]	[278..1]
gi\|73857740, gi\|... - gi\|74314263\|ref\|YP_312682.1\| transcriptional antiterminator BglG [Shigella sonnei Ss046], gi\|7385774...	233.0	[0..1]	[278..1]
gi\|91213246, gi\|... - gi\|91213246\|ref\|YP_543232.1\| transcriptional antiterminator BglG [Escherichia coli UTI89], gi\|910748... gi\|226902787, gi... - gi\|237703523\|ref\|ZP_04534004.1\| transcriptional antiterminator BglG [Escherichia sp. 3_2_53FAA], gi\|...	232.0	[0..1]	[278..9]
gi\|110617130, gi... - gi\|110807582\|ref\|YP_691102.1\| transcriptional antiterminator BglG [Shigella flexneri 5 str. 8401], g...	232.0	[0..1]	[278..1]
gi\|26250464, gi\|... - gi\|26250464\|ref\|NP_756504.1\| transcriptional antiterminator BglG [Escherichia coli CFT073], gi\|26110...	231.0	[0..1]	[278..9]
gi\|110644064, gi... - gi\|110644064\|ref\|YP_671794.1\| transcriptional antiterminator BglG [Escherichia coli 536], gi\|1103456... gi\|191170496, gi... - gi\|75242489\|ref\|ZP_00726233.1\| COG3711: Transcriptional antiterminator [Escherichia coli F11], gi\|19...	230.0	[0..1]	[278..1]
gi\|238789978, gi... - gi\|77975590\|ref\|ZP_00831125.1\| COG3711: Transcriptional antiterminator [Yersinia frederiksenii ATCC ...	225.0	[0..3]	[277..1]
gi\|238728634, gi... - gi\|77979133\|ref\|ZP_00834554.1\| COG3711: Transcriptional antiterminator [Yersinia intermedia ATCC 299...	223.0	[0..3]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMQITKILN NNVVVVIDDQ QREKVVMGRG IGFQKRAGER INSSGIEKEY ALSSHELNGR  60
   61 LSELLSHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1l1cA
Description:	LicT
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [69-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLEVMATCDR IISLAQERLG KLQDSIYISL TDHCQFAIKR FQQNVLLPNP LLWDIQRLYP  60
   61 KEFQLGEEAL TIIDKRLGVQ LPKDEVGFIA MHLVSAQMSG NMEDVAGVTQ LMREMLQLIK 120
  121 FQFSLNYQEE SLSYQRLVTH LKFLSWRILE HASINDSDES LQQAVKQNYP QAWQCAERIA 180
  181 IFIGLQYQRK ISPAEIMFLA INIERVRKEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	1tlvA
Description:	Structure of the native and inactive LicT PRD from B. subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
transcription antiterminator activity	1.04498481068613	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: