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View Structure Prediction Details

Protein: CLPR3_ARATH
Organism: Arabidopsis thaliana
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPR3_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971563 - gi|51971563|dbj|BAD44446.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
316.0 [0..1] [330..1]

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Predicted Domain #1
Region A:
Residues: [1-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASCLQASMN SLLPRSSSFS PHPPLSSNSS GRRNLKTFRY AFRAKASAKI PMPPINPKDP  60
   61 FLSTLASIAA NSPEKLLNRP VNADVPPYLD IFDSPQLMSS PAQVERSVAY NEHRPRTPPP 120
  121 DLPSMLLDGR IVYIGMPLVP AVTELVVAEL MYLQWLDPKE PIYIYINSTG TTRDDGETVG 180
  181 MESEGFAIYD SLMQLKNEVH TVCVGAAIGQ ACLLLSAGTK GKRFMMPHAK AMIQQPRVPS 240
  241 SGLMPASDVL IRAKEVITNR DILVELLSKH TGNSVETVAN VMRRPYYMDA PKAKEFGVID 300
  301 RILWRGQEKI IADVVPSEEF DKNAGIKSVV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1tg6A
Description: Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46154163027498 bayes_pls_golite062009
CoA carboxylase activity 0.939626895227199 bayes_pls_golite062009
acetyl-CoA carboxylase activity 0.764444938444292 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.621229080200493 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.620657548610719 bayes_pls_golite062009
hydrolase activity 0.534319520590169 bayes_pls_golite062009
binding 0.367666848528835 bayes_pls_golite062009
ligase activity 0.32092496884003 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle