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View Structure Prediction Details

Protein: RWA1_ARATH
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RWA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|15983464 - gi|15983464|gb|AAL11600.1|AF424606_1 AT5g46340/MPL12_14 [Arabidopsis thaliana]
805.0 [0..1] [540..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDPGPITPG QVSFLLGVIP IFVGWIYSEL LEYRKSWVPL KPHSDNNLVE LGDVAEKDDD  60
   61 KADLLEGGLA RSPSVKFHNS SIRTNIIRFL S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSFLLEHR ATLRAMSEFG AILIYFYICD RTELLGDSTK NYNRDLFLFL YVLLIIVSAM  60
   61 TSLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [156-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHNDKSPISG KSILYLNRHQ TEEWKGWMQV LFLMYHYFAA AEIYNAIRIF IAAYVWMTGF  60
   61 GNFSYYYVRK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [226-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFSVARFAQM MWRLNFFVAF CCIVLNNDYM LYYICPMHTL FTLMVYGALG IFSKYNEIGS  60
   61 VMALKIFSCF LVVFLLWEIP GAFEIFWGPL TFLLGYNDPA K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [327-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLHRLHEWH FRSGLDRYIW IIGMIYAYYH PTVERWMEKL EDCETKKRLS IKAAIVTITV  60
   61 LVGYVWYECI YKLDRTSYNM Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [408-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPYTSWIPIT VYICLRNFTH QLRSVSLTLF AWLGKITLET YISQFHIWLR SNMPDGQPKW  60
   61 LLSIIPGYPM LNFMLTTAIY VLVSHRLFEL TNTLKTVFVP TKDNKRLFSN FIAGIAIALP 120
  121 LYCFSFVLLQ IHR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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