YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229687740, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	663 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229687740, gi....

Description	E-value	Query Range	Subject Range
gi\|238723948, gi... - gi\|77974310\|ref\|ZP_00829851.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Yers...	0.0	[1..663]	[1..663]
CYOB_ECOLI - Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol oxidase polypeptide I) (Cytochrome o subunit 1)... gi\|189377367, gi... - gi\|189377367\|gb\|EDU95783.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... gi\|238860707, gi... - gi\|238899719\|ref\|YP_002925515.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli BW2952],... gi\|189373735, gi... - gi\|189373735\|gb\|EDU92151.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... gi\|242376212, gi... - gi\|251783939\|ref\|YP_002998243.1\| hypothetical protein B21_00386 [Escherichia coli BL21], gi\|24237621... gi\|169887852, gi... - gi\|170080017\|ref\|YP_001729337.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli str. K-1... gi\|254287304, gi... - gi\|254287304\|ref\|YP_003053052.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli BL21(DE3... gi\|169756125, gi... - gi\|170021197\|ref\|YP_001726151.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli ATCC 87... gi\|253972401, gi... - gi\|254160500\|ref\|YP_003043608.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli B str. R... gi\|208806406, gi... - gi\|208806406\|ref\|ZP_03248743.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 ... gi\|254591015, gi... - gi\|254791615\|ref\|YP_003076452.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli O157:H7 ... gi\|170683544, gi... - gi\|170683544\|ref\|YP_001742572.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli SMS-3-5... gi\|208737450, gi... - gi\|208823257\|ref\|ZP_03263575.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 ... gi\|208732165, gi... - gi\|208815517\|ref\|ZP_03256696.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 ... gi\|168756973, gi... - gi\|189355977\|gb\|EDU74396.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... CYOB_ECOL6 - Cytochrome bo(3) ubiquinol oxidase subunit 1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|188015878, gi... - gi\|188015878\|gb\|EDU54000.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... CYOB_ECO57 - Cytochrome bo(3) ubiquinol oxidase subunit 1 OS=Escherichia coli O157:H7 GN=cyoB PE=3 SV=1 gi\|189362501, gi... - gi\|189362501\|gb\|EDU80920.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... EG10179 - cytochrome o ubiquinol oxidase subunit I / Cytochrome o oxidase subunit I, quinone-binding domain; c... gi\|168761637, gi... - gi\|189367978\|gb\|EDU86394.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... gi\|15800161, gi\|... - gi\|15800161\|ref\|NP_286173.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli O157:H7 EDL9... gi\|188999367, gi... - gi\|188999367\|gb\|EDU68353.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... gi\|187768288, gi... - gi\|187768288\|gb\|EDU32132.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 str.... gi\|218698657, gi... - gi\|218698657\|ref\|YP_002406286.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli IAI39], ... gi\|218693894, gi... - gi\|218693894\|ref\|YP_002401561.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli 55989], ... gi\|218430811, gi... - gi\|218703714\|ref\|YP_002411233.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli UMN026],... gi\|209917647, gi... - gi\|209917647\|ref\|YP_002291731.1\| cytochrome O ubiquinol oxidase subunit I [Escherichia coli SE11], g... gi\|209159774, gi... - gi\|209398374\|ref\|YP_002269077.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7... gi\|217325466, gi... - gi\|217325466\|ref\|ZP_03441550.1\| cytochrome o ubiquinol oxidase, subunit I [Escherichia coli O157:H7 ... gi\|215263584, gi... - gi\|215485512\|ref\|YP_002327943.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli O127:H6 ... gi\|218359765, gi... - gi\|218552997\|ref\|YP_002385910.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli IAI1], g... gi\|218357442, gi... - gi\|218549901\|ref\|YP_002383692.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia fergusonii AT... gi\|218425858, gi... - gi\|218688294\|ref\|YP_002396506.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli ED1a], g... gi\|218557340, gi... - gi\|218557340\|ref\|YP_002390253.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli S88], gi... gi\|192927139, gi... - gi\|75256805\|ref\|ZP_00728410.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|75512492, gi\|... - gi\|75512492\|ref\|ZP_00735031.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... CYOB_ECOL6 - Ubiquinol oxidase subunit 1 OS=Escherichia coli O6 GN=cyoB PE=3 SV=1 gi\|75230158 - gi\|75230158\|ref\|ZP_00716662.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|193068597, gi... - gi\|75237185\|ref\|ZP_00721232.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|115511815, gi... - gi\|117622691\|ref\|YP_851604.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli APEC O1], g... gi\|91071075, gi\|... - gi\|91209501\|ref\|YP_539487.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli UTI89], gi\|9... gi\|124528858, gi... - gi\|124528858\|ref\|ZP_01700043.1\| Cytochrome-c oxidase [Escherichia coli B], gi\|124500195\|gb\|EAY47671.... gi\|13359942, gi\|... - gi\|15829739\|ref\|NP_308512.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli O157:H7 str.... gi\|74311006, gi\|... - gi\|74311006\|ref\|YP_309425.1\| cytochrome o ubiquinol oxidase subunit I [Shigella sonnei Ss046], gi\|73... gi\|85674571, gi\|... - gi\|89107301\|ref\|AP_001081.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli str. K-12 su... gi\|194419233, gi... - gi\|83570300\|ref\|ZP_00921745.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Shig... gi\|157065636, gi... - gi\|75194652\|ref\|ZP_00704722.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|75209989, gi\|... - gi\|75209989\|ref\|ZP_00710178.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|194438909, gi... - gi\|83585648\|ref\|ZP_00924290.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|157155647, gi... - gi\|75189500\|ref\|ZP_00702767.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|227838646, gi... - gi\|227884560\|ref\|ZP_04002365.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli 83972], g... EG10179 - cytochrome o ubiquinol oxidase subunit I / Cytochrome o oxidase subunit I, quinone-binding domain; c... gi\|237707575, gi... - gi\|237707575\|ref\|ZP_04538056.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia sp. 3_2_53FAA]...	0.0	[1..663]	[1..663]
gi\|81244330, gi\|... - gi\|82542919\|ref\|YP_406866.1\| cytochrome o ubiquinol oxidase subunit I [Shigella boydii Sb227], gi\|81...	0.0	[1..663]	[1..663]
gi\|187734130, gi... - gi\|75176905\|ref\|ZP_00697021.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Shig...	0.0	[1..663]	[1..663]
gi\|110342283, gi... - gi\|110640691\|ref\|YP_668419.1\| cytochrome o ubiquinol oxidase subunit I [Escherichia coli 536], gi\|11...	0.0	[1..663]	[1..663]
gi\|50120081, gi\|... - gi\|50120081\|ref\|YP_049248.1\| cytochrome O ubiquinol oxidase subunit I [Pectobacterium atrosepticum S...	0.0	[1..663]	[1..663]
gi\|238791424, gi... - gi\|77979398\|ref\|ZP_00834817.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Yers...	0.0	[1..663]	[1..663]
gi\|37527736, gi\|... - gi\|37527736\|ref\|NP_931081.1\| ubiquinol oxidase polypeptide I (cytochrome O subunit 1) (oxidase BO(3)...	0.0	[1..663]	[1..663]
gi\|77956944, gi\|... - gi\|77956944\|ref\|ZP_00821016.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Yers... gi\|238720668, gi... - gi\|77962959\|ref\|ZP_00826774.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Yers...	0.0	[1..663]	[1..663]
gi\|62126687, gi\|... - gi\|62179054\|ref\|YP_215471.1\| cytochrome o ubiquinol oxidase subunit I [Salmonella enterica subsp. en...	0.0	[1..663]	[1..663]

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Predicted Domain #1

Region A:
Residues: [1-663]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKLTLDAV PLGEPIIMVT VAAIIIGGAA LVAALTYFGK WKWLWSEWLT SVDHKKIGIM  60
   61 YILVAMVMLL RGFADAIMMR SQQALASAGE AGFLPPHHYD QIFTAHGVIM IFFMAMPFVV 120
  121 GLMNIVVPLQ IGARDVAFPF LNSLSFWLFA VGVVLINISL GVGEFAQTGW LAYPPLSGIE 180
  181 YSPGVGVDYW IWSLQISGLG TLLTGVNFFA TILKMRAPGM SMMKMPVFTW AAFCTNILII 240
  241 VSFPILTVTV ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL VLPVFGVFSE 300
  301 VTATFSRKRL FGYTSLVWAT IAITVLSFIV WLHHFFTMGS GANVNAFFGI ATMIISIPTG 360
  361 VKIFNWLFTM YQGRIQINSA MLWTIGFIVT FSIGGMTGVL LAVPGANFVL HNSLFLIAHF 420
  421 HNVIIGGVVF GCFAGLTYWW PKSFGFMLNE KWGIRAFWFW IIGFFVAFMP LYVLGFMGMT 480
  481 RRLSQDINPE FHTMLMVAAG GAALIACGIL CQVIQVFVSI RDREQNRDLT GDPWGARTLE 540
  541 WSTSSPPPFY NFAVVPNVVD RDEFWDMKEK GEAYKRPAKY EEIHMPKNTG AGVIIAGFSL 600
  601 IFGFAMVWYI WWLAIIGFVG MIVTWIVKSF DEDVDYYVPA AEVERIENLH HEQISKAGVN 660
  661 HVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1fftA
Description:	Cytochrome O ubiquinol oxidase, subunit I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
heme-copper terminal oxidase activity	14.1725811596039	bayes_pls_golite062009
cytochrome-c oxidase activity	13.8542976951523	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	13.8542976951523	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	13.8542976951523	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	7.37127314407573	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	7.21569868255501	bayes_pls_golite062009
oxidoreductase activity	7.16307962729639	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	6.59819712923927	bayes_pls_golite062009
cation transmembrane transporter activity	6.32599750294462	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	6.13181895906867	bayes_pls_golite062009
ion transmembrane transporter activity	6.1152058837897	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	5.8923420516615	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.6803770025358	bayes_pls_golite062009
substrate-specific transporter activity	5.45928453313406	bayes_pls_golite062009
cytochrome o ubiquinol oxidase activity	5.02163876080875	bayes_pls_golite062009
catalytic activity	1.95966890211023	bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity	1.51081278400602	bayes_pls_golite062009
electron carrier activity	1.29518639068237	bayes_pls_golite062009
binding	0.89004160546195	bayes_pls_golite062009
transporter activity	0.37947088637216	bayes_pls_golite062009
transmembrane transporter activity	0.36572623683433	bayes_pls_golite062009
protein binding	0.358081002328109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: