YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253973792, gi...
Organism:	Escherichia coli B str. REL606
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253973792, gi....

Description	E-value	Query Range	Subject Range
EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOLI - ProP effector - Escherichia coli PROQ_ECODH - RNA chaperone ProQ OS=Escherichia coli (strain K12 / DH10B) GN=proQ PE=3 SV=1 EG12866 - RNA chaperone, putative ProP translation regulator / RNA chaperone, probable regulator of ProP trans... PROQ_ECOBW - RNA chaperone ProQ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=proQ PE=3 SV=1 gi\|85675139, gi\|... - gi\|89108671\|ref\|AP_002451.1\| predicted structural transport element [Escherichia coli str. K-12 subs...	303.0	[0..1]	[232..1]
sp\|B7USK8\|PROQ_ECO27 - ProP effector OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECOK1 - RNA chaperone ProQ OS=Escherichia coli O1:K1 / APEC GN=proQ PE=3 SV=1 PROQ_ECOL6 - ProP effector OS=Escherichia coli O6 GN=proQ PE=3 SV=1 gi\|75239748, gi\|... - gi\|75239748\|ref\|ZP_00723711.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... PROQ_ECOUT - RNA chaperone ProQ OS=Escherichia coli (strain UTI89 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL5 - RNA chaperone ProQ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECOL6 - RNA chaperone ProQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proQ PE=3 SV=1 PROQ_ECO27 - RNA chaperone ProQ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proQ PE=3 SV=1 PROQ_ECO45 - RNA chaperone ProQ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proQ PE=3 SV=1 gi\|227837315, gi... - gi\|227885742\|ref\|ZP_04003547.1\| solute/DNA competence effector [Escherichia coli 83972], gi\|22783731... PROQ_ECO81 - RNA chaperone ProQ OS=Escherichia coli O81 (strain ED1a) GN=proQ PE=3 SV=1	298.0	[0..1]	[232..1]
PROQ_SHIB3 - RNA chaperone ProQ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proQ PE=3 SV=1	297.0	[0..1]	[232..1]
PROQ_SHIF8 - RNA chaperone ProQ OS=Shigella flexneri serotype 5b (strain 8401) GN=proQ PE=3 SV=1	297.0	[0..1]	[232..1]
PROQ_ECO24 - RNA chaperone ProQ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proQ PE=3 SV=1	296.0	[0..1]	[232..1]
gi\|168802392, gi... - gi\|189375614\|gb\|EDU94030.1\| ProP effector [Escherichia coli O157:H7 str. EC508], gi\|168802392\|ref\|ZP... gi\|195939732 - gi\|195939732\|ref\|ZP_03085114.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 st... gi\|208725251, gi... - gi\|208810735\|ref\|ZP_03252611.1\| ProP effector [Escherichia coli O157:H7 str. EC4206], gi\|208725251\|g... gi\|208731085, gi... - gi\|208816742\|ref\|ZP_03257862.1\| ProP effector [Escherichia coli O157:H7 str. EC4045], gi\|208731085\|g... PROQ_SHIDS - RNA chaperone ProQ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=proQ PE=3 SV=1 gi\|208739003, gi... - gi\|208818880\|ref\|ZP_03259200.1\| ProP effector [Escherichia coli O157:H7 str. EC4042], gi\|208739003\|g... gi\|192956790, gi... - gi\|75235365\|ref\|ZP_00719591.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co... PROQ_ECO5E - RNA chaperone ProQ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proQ PE=3 SV=1 gi\|217318037, gi... - gi\|217328690\|ref\|ZP_03444771.1\| ProP effector [Escherichia coli O157:H7 str. TW14588], gi\|217318037\|... gi\|254592855, gi... - gi\|254793455\|ref\|YP_003078292.1\| predicted structural transport element [Escherichia coli O157:H7 st... PROQ_ECO57 - RNA chaperone ProQ OS=Escherichia coli O157:H7 GN=proQ PE=3 SV=1 gi\|168752081, gi... - gi\|188013972\|gb\|EDU52094.1\| ProP effector [Escherichia coli O157:H7 str. EC4113], gi\|168752081\|ref\|Z... gi\|168758590, gi... - gi\|189354611\|gb\|EDU73030.1\| ProP effector [Escherichia coli O157:H7 str. EC4401], gi\|168758590\|ref\|Z... gi\|168762377, gi... - gi\|189367405\|gb\|EDU85821.1\| ProP effector [Escherichia coli O157:H7 str. EC4501], gi\|168762377\|ref\|Z... gi\|187767052, gi... - gi\|187767052\|gb\|EDU30896.1\| ProP effector [Escherichia coli O157:H7 str. EC4196], gi\|168777775\|ref\|Z... gi\|188999437, gi... - gi\|188999437\|gb\|EDU68423.1\| ProP effector [Escherichia coli O157:H7 str. EC4076], gi\|168783129\|ref\|Z... gi\|168788249, gi... - gi\|189371976\|gb\|EDU90392.1\| ProP effector [Escherichia coli O157:H7 str. EC869], gi\|168788249\|ref\|ZP... gi\|15831795, gi\|... - gi\|15831795\|ref\|NP_310568.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 str. ... gi\|15804984 - gi\|15804984\|ref\|NP_288268.1\| putative solute/DNA competence effector [Escherichia coli O157:H7 EDL93... gi\|209767768, gi... - pir\|\|E90946 ProP effector [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi...	294.0	[0..1]	[232..1]
PROQ_SALPB - ProP effector OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=proQ PE=3 SV=1 PROQ_SALPB - RNA chaperone ProQ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=proQ PE=3 SV=1 PROQ_SALCH - RNA chaperone ProQ OS=Salmonella choleraesuis (strain SC-B67) GN=proQ PE=3 SV=1 PROQ_SALCH - ProP effector OS=Salmonella choleraesuis GN=proQ PE=3 SV=1 gi\|29137135, gi\|... - gi\|29141508\|ref\|NP_804850.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ent... gi\|16760734 - gi\|16760734\|ref\|NP_456351.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ent... PROQ_SALTI - RNA chaperone ProQ OS=Salmonella typhi GN=proQ PE=3 SV=1 PROQ_SALTY - RNA chaperone ProQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=proQ PE=3 SV=1 gi\|238912089 - gi\|238912089\|ref\|ZP_04655926.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ... PROQ_SALCH - ProP effector OS=Salmonella choleraesuis GN=proQ PE=3 SV=1 gi\|168259909, gi... - gi\|205351193\|gb\|EDZ37824.1\| ProP effector [Salmonella enterica subsp. enterica serovar Hadar str. RI... gi\|168241446, gi... - gi\|205339647\|gb\|EDZ26411.1\| ProP effector [Salmonella enterica subsp. enterica serovar Heidelberg st... gi\|168238453, gi... - gi\|197288619\|gb\|EDY27994.1\| ProP effector [Salmonella enterica subsp. enterica serovar Schwarzengrun... gi\|205331767, gi... - gi\|205331767\|gb\|EDZ18531.1\| ProP effector [Salmonella enterica subsp. enterica serovar Kentucky str.... PROQ_SALTY - ProP effector OS=Salmonella typhimurium GN=proQ PE=3 SV=1 PROQ_SALA4 - RNA chaperone ProQ OS=Salmonella agona (strain SL483) GN=proQ PE=3 SV=1 PROQ_SALSV - RNA chaperone ProQ OS=Salmonella schwarzengrund (strain CVM19633) GN=proQ PE=3 SV=1 gi\|194471629, gi... - gi\|194471629\|ref\|ZP_03077613.1\| ProP effector [Salmonella enterica subsp. enterica serovar Kentucky ... PROQ_SALHS - RNA chaperone ProQ OS=Salmonella heidelberg (strain SL476) GN=proQ PE=3 SV=1 PROQ_SALTI - ProP effector OS=Salmonella typhi GN=proQ PE=3 SV=1 PROQ_SALTY - ProP effector OS=Salmonella typhimurium GN=proQ PE=3 SV=1 gi\|167993799, gi... - gi\|205328223\|gb\|EDZ14987.1\| ProP effector [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ... gi\|167553466, gi... - gi\|205322095\|gb\|EDZ09934.1\| ProP effector [Salmonella enterica subsp. enterica serovar Saintpaul str... PROQ_SALPC - RNA chaperone ProQ OS=Salmonella paratyphi C (strain RKS4594) GN=proQ PE=3 SV=1 gi\|213855549 - gi\|213855549\|ref\|ZP_03383789.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ... gi\|213649649 - gi\|213649649\|ref\|ZP_03379702.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ... gi\|213615628 - gi\|213615628\|ref\|ZP_03371454.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ... lcl\|NC_016856.1_... - [gene=proQ] [protein=putative solute/DNA competence effector] [protein_id=YP_005237792.1] [location=... gi\|200390718, gi... - gi\|200390718\|ref\|ZP_03217329.1\| ProP effector [Salmonella enterica subsp. enterica serovar Virchow s... PROQ_SALDC - RNA chaperone ProQ OS=Salmonella dublin (strain CT_02021853) GN=proQ PE=3 SV=1 PROQ_SALPK - RNA chaperone ProQ OS=Salmonella paratyphi A (strain AKU_12601) GN=proQ PE=3 SV=1 gi\|197262503, gi... - gi\|197262503\|ref\|ZP_03162577.1\| ProP effector [Salmonella enterica subsp. enterica serovar Saintpaul... gi\|213424196 - gi\|213424196\|ref\|ZP_03357061.1\| putative solute/DNA competence effector [Salmonella enterica subsp. ... PROQ_SALEP - RNA chaperone ProQ OS=Salmonella enteritidis PT4 (strain P125109) GN=proQ PE=3 SV=1 PROQ_SALG2 - RNA chaperone ProQ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=proQ PE=3 SV=1 gi\|204320017, gi... - gi\|204930973\|ref\|ZP_03221799.1\| ProP effector [Salmonella enterica subsp. enterica serovar Javiana s...	285.0	[0..1]	[232..1]
gi\|83585568 - gi\|83585568\|ref\|ZP_00924212.1\| COG3109: Activator of osmoprotectant transporter ProP [Escherichia co...	274.0	[0..1]	[220..1]
gi\|238724838, gi... - gi\|77975213\|ref\|ZP_00830749.1\| COG3109: Activator of osmoprotectant transporter ProP [Yersinia frede...	260.0	[0..1]	[232..1]
PROQ_YERPE - RNA chaperone ProQ OS=Yersinia pestis GN=proQ PE=3 SV=1 gi\|229689426, gi... - gi\|229843818\|ref\|ZP_04463961.1\| ProP effector [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|229702423, gi... - gi\|229894668\|ref\|ZP_04509849.1\| ProP effector [Yersinia pestis Pestoides A], gi\|229702423\|gb\|EEO9044... gi\|229693415, gi... - gi\|229897078\|ref\|ZP_04512234.1\| ProP effector [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... PROQ_YERPB - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=proQ PE=3 SV=1 PROQ_YERPA - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=proQ PE=3 SV=1 PROQ_YERPN - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=proQ PE=3 SV=1 PROQ_YERPG - RNA chaperone ProQ OS=Yersinia pestis bv. Antiqua (strain Angola) GN=proQ PE=3 SV=1 gi\|165922629, gi... - gi\|165925520\|ref\|ZP_02221352.1\| ProP effector [Yersinia pestis biovar Orientalis str. F1991016], gi\|... PROQ_YERP3 - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=proQ PE=3 SV=1 gi\|45441541, gi\|... - gi\|45441541\|ref\|NP_993080.1\| putative solute/DNA competence effector [Yersinia pestis biovar Microtu... gi\|165992589, gi... - gi\|166008207\|ref\|ZP_02229105.1\| ProP effector [Yersinia pestis biovar Antiqua str. E1979001], gi\|165... gi\|22125759, gi\|... - gi\|22125759\|ref\|NP_669182.1\| putative solute/DNA competence effector [Yersinia pestis KIM], gi\|21958... gi\|149290715, gi... - gi\|149366341\|ref\|ZP_01888375.1\| osmoregulatory protein [Yersinia pestis CA88-4125], gi\|149290715\|gb\|... gi\|165938476, gi... - gi\|165938476\|ref\|ZP_02227033.1\| ProP effector [Yersinia pestis biovar Orientalis str. IP275], gi\|165... gi\|218928832, gi... - gi\|218928832\|ref\|YP_002346707.1\| putative solute/DNA competence effector [Yersinia pestis CO92], gi\|... PROQ_YERPP - RNA chaperone ProQ OS=Yersinia pestis (strain Pestoides F) GN=proQ PE=3 SV=1 gi\|167048900, gi... - gi\|167401795\|ref\|ZP_02307286.1\| ProP effector [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|16... PROQ_YERPS - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=proQ PE=3 SV=1 PROQ_YERPS - ProP effector OS=Yersinia pseudotuberculosis GN=proQ PE=3 SV=1 gi\|166210503, gi... - gi\|166210503\|ref\|ZP_02236538.1\| ProP effector [Yersinia pestis biovar Antiqua str. B42003004], gi\|16... PROQ_YERPY - RNA chaperone ProQ OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=proQ PE=3 SV=1 gi\|166958453, gi... - gi\|167422606\|ref\|ZP_02314359.1\| ProP effector [Yersinia pestis biovar Orientalis str. MG05-1020], gi...	260.0	[0..1]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQPKLNSS KEVIAFLAER FPHCFSAEGE ARPLKIGIFQ DLVDRVAGEM NLSKTQLRSA  60
   61 LRLYTSSWRY LYGVKPGATR VDLDGNPCGE LDEQHVEHAR KQLEEAKARV QAQRAEQQAK 120
  121 KREAAAAAGE KEDAPRRERK PRPTTPRRKE GAERKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1dvoA
Description:	Repressor of bacterial conjugation FinO
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [157-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAQKPVEKAP KTVKAPREEQ HTPVSDISAL TVGQALKVKA GQNAMDATVL EITKDGVRVQ  60
   61 LNSGMSLIVR AEHLVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.306	0.076	cytoplasm	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.469	0.001	cytoplasm	g.41.5	Rubredoxin-like
View	Download	0.327	0.000	cytoplasm	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.397	0.000	cytoplasm	b.114.1	N-utilization substance G protein NusG, insert domain
View	Download	0.438	N/A	N/A	b.61.2	Metalloprotease inhibitor

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits