YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229688787, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229688787, gi....

Description	E-value	Query Range	Subject Range
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	2.0E-65	[1..129]	[1..130]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	1.0E-63	[4..126]	[67..189]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	5.0E-63	[5..129]	[41..165]
gi\|113526304, gi... - gi\|113867528\|ref\|YP_726017.1\| methionine sulfoxide reductase B [Ralstonia eutropha H16], gi\|11352630...	1.0E-62	[1..130]	[1..130]
MSRB_RALSO - Peptide methionine sulfoxide reductase msrB OS=Ralstonia solanacearum GN=msrB PE=3 SV=1 MSRB_RALSO - Peptide methionine sulfoxide reductase MsrB OS=Ralstonia solanacearum (strain GMI1000) GN=msrB PE=3 ...	1.0E-62	[1..126]	[1..126]
gi\|83749028, gi\|... - gi\|83749028\|ref\|ZP_00946035.1\| Peptide methionine sulfoxide reductase msrB [Ralstonia solanacearum U... gi\|207743082, gi... - gi\|207743082\|ref\|YP_002259474.1\| peptide methionine sulfoxide reductase related protein [Ralstonia s... gi\|206588761, gi... - gi\|207723560\|ref\|YP_002253959.1\| peptide methionine sulfoxide reductase related protein [Ralstonia s...	1.0E-62	[1..126]	[1..126]
gi\|68557802, gi\|... - gi\|94310803\|ref\|YP_584013.1\| methionine sulfoxide reductase B [Ralstonia metallidurans CH34], gi\|933...	2.0E-62	[1..136]	[1..135]
gi\|45519067, gi\|... - gi\|73541089\|ref\|YP_295609.1\| methionine sulfoxide reductase B [Ralstonia eutropha JMP134], gi\|721185...	3.0E-62	[1..136]	[1..136]
gi\|45441759, gi\|... - gi\|45441759\|ref\|NP_993298.1\| methionine sulfoxide reductase B [Yersinia pestis biovar Microtus str. ... gi\|22126052, gi\|... - gi\|22126052\|ref\|NP_669475.1\| methionine sulfoxide reductase B [Yersinia pestis KIM], gi\|21959004\|gb\|...	3.0E-62	[1..137]	[20..156]
gi\|26248037, gi\|... - gi\|26248037\|ref\|NP_754077.1\| methionine sulfoxide reductase B [Escherichia coli CFT073], gi\|26108440...	4.0E-62	[1..137]	[11..147]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKELNPTEN IEKLSDIQRY VTQERGTEAP FTGKLLHNKR DGVYQCLCCH QPLFISESKF  60
   61 DSGCGWPSFY QPIDADSIRY IDDYSHNMHR IEIRCGNCDA HLGHVFPDGP QPTGERYCIN 120
  121 SASLNFVDDQ NGEQTAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.045757
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: