YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228917934, gi...
Organism:	Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228917934, gi....

Description	E-value	Query Range	Subject Range
gi\|75762684, gi\|... - gi\|75762684\|ref\|ZP_00742523.1\| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar is... gi\|228855827, gi... - gi\|228903800\|ref\|ZP_04067916.1\| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 422...	0.0	[1..346]	[1..346]
gi\|229147866, gi... - gi\|229147866\|ref\|ZP_04276207.1\| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24], gi... gi\|228652914, gi... - gi\|229130575\|ref\|ZP_04259531.1\| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4], gi... gi\|229112739, gi... - gi\|229112739\|ref\|ZP_04242272.1\| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15], gi\|... gi\|29898917, gi\|... - gi\|30023356\|ref\|NP_834987.1\| SUA5 protein [Bacillus cereus ATCC 14579], gi\|29898917\|gb\|AAP12188.1\| S...	0.0	[1..346]	[1..346]
gi\|42784497, gi\|... - gi\|42784497\|ref\|NP_981744.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987], gi\|427...	0.0	[1..346]	[1..346]
gi\|163943013, gi... - gi\|89209237\|ref\|ZP_01187684.1\| Sua5/YciO/YrdC/YwlC [Bacillus weihenstephanensis KBAB4], gi\|89152833\|...	0.0	[1..346]	[1..346]
gi\|89203545, gi\|... - gi\|89203545\|ref\|ZP_01182186.1\| Sua5/YciO/YrdC/YwlC [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	0.0	[1..346]	[1..346]
YWLC_BACSU - Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC OS=Bacillus subtilis GN=ywlC PE=3... gi\|221320895 - gi\|221320895\|ref\|ZP_03602189.1\| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp. subtilis... gi\|221325179 - gi\|221325179\|ref\|ZP_03606473.1\| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp. subtilis... gi\|221315984 - gi\|221315984\|ref\|ZP_03597789.1\| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp. subtili... SUA5_BACSU - Threonylcarbamoyl-AMP synthase OS=Bacillus subtilis (strain 168) GN=ywlC PE=1 SV=1	0.0	[1..345]	[1..346]
gi\|89095606, gi\|... - gi\|89095606\|ref\|ZP_01168500.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911], gi\|89...	0.0	[1..344]	[1..345]
gi\|25305355 - pir\|\|C84121 hypothetical protein BH3771 [imported] - Bacillus halodurans (strain C-125) gi\|10176395, gi\|... - gi\|15616333\|ref\|NP_244638.1\| hypothetical protein BH3771 [Bacillus halodurans C-125], gi\|10176395\|db...	0.0	[2..346]	[5..348]
gi\|52787618, gi\|... - gi\|52787618\|ref\|YP_093447.1\| YwlC [Bacillus licheniformis ATCC 14580], gi\|52350120\|gb\|AAU42754.1\| Yw...	0.0	[1..345]	[3..348]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTNMWVVDN VVERKKYYPQ LQEAAKLLRE NEAIAFPTET VYGLGANAMN DEAIAKIFEA  60
   61 KGRPSDNPLI VHIGTKSQLD GIVKEIPPVA EKLMEHFWPG PLTIILPRKE GISEKVTAGL 120
  121 HTVGVRMPDH PVALALIEEA NVPVAAPSAN RSGRPSPTLA SHVYEDLNEK IAGIVDGGAT 180
  181 GVGVESTVID CTSAVPTILR PGGITKEQLE AVIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1k7jA
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
telomeric DNA binding	2.58217232196133	bayes_pls_golite062009
single-stranded telomeric DNA binding	1.94245361512193	bayes_pls_golite062009
binding	1.44524229223398	bayes_pls_golite062009
nucleic acid binding	1.15094304608167	bayes_pls_golite062009
DNA binding	0.99027678526068	bayes_pls_golite062009
RNA binding	0.63108051002538	bayes_pls_golite062009
catalytic activity	0.343636936190038	bayes_pls_golite062009
protein binding	0.207821310455625	bayes_pls_golite062009
structure-specific DNA binding	0.0989469098854212	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [215-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVSLDPALKD EKEKPKSPGM KYTHYAPKAP LSIVEGSREF IQRLVDEKKE EGFKVGVLTT  60
   61 EEYHHIYNAD VVLSCGVRSD LASVATKLYD VLRTFDASEV DVIFSESFPN EGIGNAIMNR 120
  121 LTKAAGHHII TE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2yv4A
Description:	No description for 2yv4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: