YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229900035, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229900035, gi....

Description	E-value	Query Range	Subject Range
gi\|108810343, gi... - gi\|108810343\|ref\|YP_646110.1\| carboxymethylenebutenolidase [Yersinia pestis Nepal516], gi\|108773991\|... gi\|108806235, gi... - gi\|108806235\|ref\|YP_650151.1\| putative carboxymethylenebutenolidase [Yersinia pestis Antiqua], gi\|10... gi\|167468710 - gi\|167468710\|ref\|ZP_02333414.1\| dienelactone hydrolase family protein [Yersinia pestis FV-1] gi\|166960977, gi... - gi\|167420848\|ref\|ZP_02312601.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|167054821, gi... - gi\|167426302\|ref\|ZP_02318055.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Mediae... gi\|166213548, gi... - gi\|166213548\|ref\|ZP_02239583.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|167048777, gi... - gi\|167401884\|ref\|ZP_02307372.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|165912960, gi... - gi\|165939187\|ref\|ZP_02227738.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|165989401, gi... - gi\|166011632\|ref\|ZP_02232530.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|22124358, gi\|... - gi\|22124358\|ref\|NP_667781.1\| carboxymethylenebutenolidase [Yersinia pestis KIM], gi\|21957135\|gb\|AAM8... gi\|162421591, gi... - gi\|162421591\|ref\|YP_001607970.1\| dienelactone hydrolase family protein [Yersinia pestis Angola], gi\|... gi\|45437881, gi\|... - gi\|45443014\|ref\|NP_994553.1\| putative carboxymethylenebutenolidase [Yersinia pestis biovar Microtus ... gi\|165921815, gi... - gi\|165926291\|ref\|ZP_02222123.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|145212350, gi... - gi\|145600654\|ref\|YP_001164730.1\| carboxymethylenebutenolidase [Yersinia pestis Pestoides F], gi\|1452...	3.0E-45	[1..267]	[24..290]
gi\|77630685, gi\|... - gi\|77630685\|ref\|ZP_00793271.1\| COG0412: Dienelactone hydrolase and related enzymes [Yersinia pseudot...	4.0E-45	[1..267]	[1..267]
Q66FT6\|Q66FT6_YERPS - Putative carboxymethylenebutenolidase - Yersinia pseudotuberculosis gi\|51587886, gi\|... - gi\|51594604\|ref\|YP_068795.1\| putative carboxymethylenebutenolidase [Yersinia pseudotuberculosis IP 3...	4.0E-45	[1..267]	[1..267]
gi\|50119144, gi\|... - gi\|50119144\|ref\|YP_048311.1\| putative carboxymethylenebutenolidase [Pectobacterium atrosepticum SCRI...	4.0E-41	[1..255]	[16..272]
gi\|24115126, gi\|... - gi\|24115126\|ref\|NP_709636.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24054396\|gb\|AAN4534...	6.0E-41	[2..257]	[34..289]
gi\|25499550, gi\|... - gi\|25499550\|pir\|\|F86070 probable enzyme Z5352 [imported] - Escherichia coli (strain O157:H7, substra... gi\|12518707, gi\|... - gi\|15804422\|ref\|NP_290462.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12518707\|gb\|AAG59... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7], gi\|13364236\|db... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7 str. Sakai], gi\|...	7.0E-41	[2..257]	[34..289]
gi\|75197713 - gi\|75197713\|ref\|ZP_00707783.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	1.0E-40	[2..257]	[30..285]
gi\|82546183, gi\|... - gi\|82546183\|ref\|YP_410130.1\| putative enzyme [Shigella boydii Sb227], gi\|81247594\|gb\|ABB68302.1\| put...	2.0E-40	[2..257]	[34..289]
gi\|75209543 - gi\|75209543\|ref\|ZP_00709764.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75188572 - gi\|75188572\|ref\|ZP_00701839.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75238280 - gi\|75238280\|ref\|ZP_00722279.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75230791 - gi\|75230791\|ref\|ZP_00717254.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	2.0E-40	[2..257]	[30..285]
gi\|81243137, gi\|... - gi\|82778989\|ref\|YP_405338.1\| putative enzyme [Shigella dysenteriae Sd197], gi\|81243137\|gb\|ABB63847.1...	2.0E-40	[2..257]	[30..285]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAHHTDQL HSLQTHGIHC GETTIPSQGD ELPAYIAKPD QHTGPYPVVI VVQEIFGVHE  60
   61 HIQDICRRLA KQGYLAIAPE LYFRQGDAKD YSNINELVNN LVKKVPDRQV LVDLDHTAHW 120
  121 ASRHGGDTKK LAITGFCWGG RIAWLYAAHN PQLKAAVAWY GKLVGEKTLF LPKYPVDVAI 180
  181 DLCAPVLGLY GGKDTSIPAE HIETMRQALR AANADAEIIV YPEAGHAFNA DYRPSYHAES 240
  241 AQDGWQRMLD WFTQHGVSAI PIPEETQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.045757
Match:	1zi8A
Description:	Crystal Structure Analysis of the dienelactone hydrolase mutant(E36D, C123S, A134S, S208G, A229V, K234R)- 1.4 A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits