YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229512833, gi...
Organism:	Vibrio cholerae TMA 21
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229512833, gi....

Description	E-value	Query Range	Subject Range
gi\|87282734, gi\|... - gi\|87302851\|ref\|ZP_01085662.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi\|87282734\|gb...	180.0	[0..2]	[116..57]
RL19_VIBCB - 50S ribosomal protein L19 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplS PE=3 SV=1 gi\|91228776, gi\|... - gi\|91228776\|ref\|ZP_01262686.1\| 50S ribosomal protein L19 [Vibrio alginolyticus 12G01], gi\|91187683\|g... gi\|148865851, gi... - gi\|153835827\|ref\|ZP_01988494.1\| ribosomal protein L19 [Vibrio harveyi HY01], gi\|148865851\|gb\|EDL6681... gi\|116183751, gi... - gi\|75854260\|ref\|ZP_00761965.1\| COG0335: Ribosomal protein L19 [Vibrio sp. Ex25], gi\|116183751\|ref\|ZP...	175.0	[0..1]	[117..1]
gi\|86168341, gi\|... - gi\|87123772\|ref\|ZP_01079622.1\| ribosomal protein L19 [Synechococcus sp. RS9917], gi\|86168341\|gb\|EAQ6...	175.0	[0..4]	[116..57]
RL19_GEOSE - 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS PE=3 SV=1	175.0	[0..1]	[113..1]
RL19_VIBVY - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain YJ016) GN=rplS PE=3 SV=1 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain CMCP6) GN=rplS PE=3 SV=3 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus GN=rplS PE=3 SV=3	174.0	[0..1]	[117..1]
gi\|84394293, gi\|... - gi\|84394293\|ref\|ZP_00993018.1\| 50S ribosomal protein L19 [Vibrio splendidus 12B01], gi\|84375096\|gb\|E...	174.0	[0..1]	[117..1]
gi\|88788832, gi\|... - gi\|88807618\|ref\|ZP_01123130.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 7805], gi\|88788832\|gb...	174.0	[0..3]	[116..51]
RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida GN=rplS PE=3 SV=2 RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida (strain Pm70) GN=rplS PE=3 SV=2	173.0	[0..1]	[115..1]
RL19_PHOLL - 50S ribosomal protein L19 OS=Photorhabdus luminescens subsp. laumondii GN=rplS PE=3 SV=1 RL19_PHOLL - 50S ribosomal protein L19 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	173.0	[0..1]	[117..1]
RL19_VIBPA - 50S ribosomal protein L19 OS=Vibrio parahaemolyticus GN=rplS PE=3 SV=2 RL19_VIBPA - 50S ribosomal protein L19 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplS PE... gi\|153838718, gi... - gi\|153838718\|ref\|ZP_01991385.1\| ribosomal protein L19 [Vibrio parahaemolyticus AQ3810], gi\|149747878...	173.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIIKALEQ EQMKQDLPQF APGDTVVVQV KVKEGDRERL QAFEGIVIAI RNRGLHSAFT  60
   61 VRKISNGEGV ERTFQTHSPV VDSIEVKRRG AVRRAKLYYL RDLSGKAARI KEKLAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1vs6P
Description:	No description for 1vs6P was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
binding	1.06497983674709	bayes_pls_golite062009
nucleic acid binding	0.694156012779703	bayes_pls_golite062009
transcription regulator activity	0.531244221462633	bayes_pls_golite062009
protein binding	0.403456843184132	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009
DNA binding	0.119656223173058	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: