YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253972055, gi...
Organism:	Escherichia coli B str. REL606
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253972055, gi....

Description	E-value	Query Range	Subject Range
gi\|84509178, gi\|... - gi\|84517060\|ref\|ZP_01004417.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Loktanella vestfolden...	177.0	[0..1]	[146..1]
gi\|86136005, gi\|... - gi\|86136005\|ref\|ZP_01054584.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Roseobacter sp. MED19...	171.0	[0..1]	[143..1]
gi\|114737865, gi... - gi\|114797691\|ref\|YP_759624.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Hyphomonas neptunium A...	171.0	[0..1]	[146..1]
gi\|56680904, gi\|... - gi\|56709219\|ref\|YP_165265.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Ruegeria pomeroyi DSS-3...	171.0	[0..1]	[143..1]
gi\|85706311, gi\|... - gi\|85706311\|ref\|ZP_01037405.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Roseovarius sp. 217],...	169.0	[0..1]	[143..1]
gi\|148655750, gi... - gi\|148655750\|ref\|YP_001275955.1\| peptidylprolyl isomerase, FKBP-type [Roseiflexus sp. RS-1], gi\|1485...	169.0	[0..4]	[144..3]
lcl\|NC_016856.1_... - [gene=slpA] [protein=FKBP-type peptidyl-prolyl cis-trans isomerase] [protein_id=YP_005235691.1] [loc... gi\|194737896, gi... - gi\|194737896\|ref\|YP_002113060.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella en... gi\|194459216, gi... - gi\|194472852\|ref\|ZP_03078836.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella ent... gi\|197241061, gi... - gi\|197262806\|ref\|ZP_03162880.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella ent... gi\|197212737, gi... - gi\|197249034\|ref\|YP_002145030.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella en... gi\|195632829, gi... - gi\|195632829\|gb\|EDX51283.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|205348681, gi... - gi\|205348681\|gb\|EDZ35312.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|194450579, gi... - gi\|194450579\|ref\|YP_002044015.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella en... gi\|205342528, gi... - gi\|205342528\|gb\|EDZ29292.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|205335078, gi... - gi\|205335078\|gb\|EDZ21842.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|62126245, gi\|... - gi\|62178612\|ref\|YP_215029.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Salmonella en... gi\|167989901, gi... - gi\|205331561\|gb\|EDZ18325.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|56126578, gi\|... - gi\|56412321\|ref\|YP_149396.1\| FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|168243560, gi... - gi\|205337478\|gb\|EDZ24242.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|197291790, gi... - gi\|197291790\|gb\|EDY31140.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|205324310, gi... - gi\|205324310\|gb\|EDZ12149.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|213852226 - gi\|213852226\|ref\|ZP_03381758.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|213646628 - gi\|213646628\|ref\|ZP_03376681.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|224581886, gi... - gi\|224581886\|ref\|YP_002635684.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmo... gi\|214001172 - gi\|214001172\|ref\|ZP_03411907.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|238910802 - gi\|238910802\|ref\|ZP_04654639.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|16501332, gi\|... - gi\|25511962\|pir\|\|AC0508 probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [imported] - Sa... gi\|213053365 - gi\|213053365\|ref\|ZP_03346243.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|16418543, gi\|... - gi\|16763438\|ref\|NP_459053.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Salmonella typhimurium L... gi\|213027715 - gi\|213027715\|ref\|ZP_03342162.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|213427311 - gi\|213427311\|ref\|ZP_03360061.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|213419186 - gi\|213419186\|ref\|ZP_03352252.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmon... gi\|199604932, gi... - gi\|200387834\|ref\|ZP_03214446.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella ent... gi\|197092733, gi... - gi\|197361258\|ref\|YP_002140893.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmo... gi\|29140592, gi\|... - gi\|29140592\|ref\|NP_803934.1\| FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|207855564, gi... - gi\|207855564\|ref\|YP_002242215.1\| probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmo... gi\|16759042 - gi\|16759042\|ref\|NP_454659.1\| FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase [Salmonella enteric... gi\|204927268, gi... - gi\|204927268\|ref\|ZP_03218470.1\| FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase [Salmonella ent...	165.0	[0..1]	[149..1]
gi\|110681064, gi... - gi\|110681064\|ref\|YP_684071.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type, putative [Roseobacter ...	164.0	[0..1]	[146..1]
gi\|83941266, gi\|... - gi\|83941266\|ref\|ZP_00953728.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Sulfitobacter sp. EE-... gi\|83842586, gi\|... - gi\|83854743\|ref\|ZP_00948273.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Sulfitobacter sp. NAS...	164.0	[0..1]	[143..1]
gi\|114766272, gi... - gi\|114766272\|ref\|ZP_01445259.1\| peptidyl-prolyl cis-trans isomerase, FKBP-type [Roseovarius sp. HTCC...	163.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVQSNSA VLVHFTLKLD DGTTAESTRN NGKPALFRLG DASLSEGLEQ HLLGLKVGDK  60
   61 TTFSLEPDAA FGVPSPDLIQ YFSRREFMDA GEPEIGAIML FTAMDGSEMP GVIREINGDS 120
  121 ITVDFNHPLA GQTVHFDIEV LEIDPALEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1ix5A
Description:	Archaeal FKBP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidyl-prolyl cis-trans isomerase activity	4.4182664267098	bayes_pls_golite062009
cis-trans isomerase activity	4.33661522951196	bayes_pls_golite062009
isomerase activity	2.83057106437196	bayes_pls_golite062009
macrolide binding	1.34183721806994	bayes_pls_golite062009
catalytic activity	1.25572252987503	bayes_pls_golite062009
FK506 binding	1.11705415888427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: