YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254723533
Organism:	Bacillus anthracis str. A1055
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254723533.

Description	E-value	Query Range	Subject Range
gi\|42782635, gi\|... - gi\|42782635\|ref\|NP_979882.1\| formate dehydrogenase accessory protein [Bacillus cereus ATCC 10987], g...	1.0E-98	[1..265]	[1..265]
gi\|49329833, gi\|... - gi\|49478277\|ref\|YP_037650.1\| formate dehydrogenase accessory protein [Bacillus thuringiensis serovar...	3.0E-98	[1..265]	[1..265]
gi\|52141965, gi\|... - gi\|52141965\|ref\|YP_084864.1\| formate dehydrogenase accessory protein [Bacillus cereus E33L], gi\|5197...	4.0E-98	[1..265]	[1..265]
gi\|228637347, gi... - gi\|229146136\|ref\|ZP_04274512.1\| Protein fdhD [Bacillus cereus BDRD-ST24], gi\|228637347\|gb\|EEK93801.1... gi\|229128841, gi... - gi\|229128841\|ref\|ZP_04257817.1\| Protein fdhD [Bacillus cereus BDRD-Cer4], gi\|228654546\|gb\|EEL10408.1... gi\|229047249, gi... - gi\|229047249\|ref\|ZP_04192849.1\| Protein fdhD [Bacillus cereus AH676], gi\|228724116\|gb\|EEL75461.1\| Pr... gi\|29897226, gi\|... - gi\|30021671\|ref\|NP_833302.1\| formate dehydrogenase accessory protein [Bacillus cereus ATCC 14579], g...	5.0E-97	[1..265]	[1..265]
gi\|47567168, gi\|... - gi\|47567168\|ref\|ZP_00237884.1\| formate dehydrogenase family accessory protein FdhD [Bacillus cereus ...	8.0E-89	[1..261]	[1..261]
gi\|229077901, gi... - gi\|229077901\|ref\|ZP_04210512.1\| Protein fdhD [Bacillus cereus Rock4-2], gi\|228705419\|gb\|EEL57794.1\| ... gi\|228795986, gi... - gi\|228963682\|ref\|ZP_04124825.1\| Protein fdhD [Bacillus thuringiensis serovar sotto str. T04001], gi\|... gi\|74492688, gi\|... - gi\|75759830\|ref\|ZP_00739906.1\| FdhD protein (fdsC) [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228951081, gi... - gi\|228951081\|ref\|ZP_04113199.1\| Protein fdhD [Bacillus thuringiensis serovar kurstaki str. T03a001],... gi\|228860306, gi... - gi\|228899275\|ref\|ZP_04063538.1\| Protein fdhD [Bacillus thuringiensis IBL 4222], gi\|228860306\|gb\|EEN0...	9.0E-89	[1..261]	[24..284]
gi\|89156059, gi\|... - gi\|89205986\|ref\|ZP_01184550.1\| Formate dehydrogenase, subunit FdhD [Bacillus weihenstephanensis KBAB...	1.0E-88	[1..261]	[23..283]
gi\|89150435, gi\|... - gi\|89201519\|ref\|ZP_01180258.1\| Formate dehydrogenase, subunit FdhD [Bacillus cereus subsp. cytotoxis...	2.0E-88	[1..261]	[1..261]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIQVEREI FRYEQGAFKH IEDSIVTEFP VTIKMNGQEF VTMVSTPEYI EDMVIGFLAS  60
   61 EGIIRKYEDI DDIWVQEKEG FVHVTTAKVN PYYEQMQNKR YITSCCGMSR QGFVFANDAL 120
  121 SAKKMNGVHV QVTAEDCFRL MKEMQQSAET FRHTGGVHNA SLCDVNGIIL SRMDIGRHNA 180
  181 LDKIYGYCLK NNISIGDKII VFSGRISSEI LLKVAKIGCE IILSKSAPTE LALQLAEELG 240
  241 ITTIGFIRNQ SLNVYTHPER VLNIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	2pw9A
Description:	No description for 2pw9A was found.

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	11.6538357294979	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.39976727113281	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.99996975993203	bayes_pls_golite062009
oxidoreductase activity	3.97029744496041	bayes_pls_golite062009
methyltransferase activity	1.82461172360024	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.74440766585265	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	1.25933001876793	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	1.14540769627856	bayes_pls_golite062009
electron carrier activity	0.851003321957332	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: