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View Structure Prediction Details

Protein: gi|254163923, gi...
Organism: Escherichia coli B str. REL606
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254163923, gi....

Description E-value Query
Range
Subject
Range
gi|36783867, gi|... - gi|37524443|ref|NP_927787.1| transcription antitermination protein NusG [Photorhabdus luminescens su...
235.0 [0..1] [181..1]
gi|161505371, gi... - gi|161505371|ref|YP_001572483.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|167554342, gi... - gi|205321448|gb|EDZ09287.1| transcription termination/antitermination factor NusG [Salmonella enteri...
gi|161617284, gi... - gi|161617284|ref|YP_001591249.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|168239843, gi... - gi|197287542|gb|EDY26935.1| transcription termination/antitermination factor NusG [Salmonella enteri...
NUSG_SALTI - Transcription antitermination protein nusG OS=Salmonella typhi GN=nusG PE=3 SV=2
gi|167995347, gi... - gi|205326985|gb|EDZ13749.1| transcription termination/antitermination factor NusG [Salmonella enteri...
gi|62182602, gi|... - gi|62182602|ref|YP_219019.1| transcription antitermination protein NusG [Salmonella enterica subsp. ...
gi|205346818, gi... - gi|205346818|gb|EDZ33449.1| transcription termination/antitermination factor NusG [Salmonella enteri...
NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2
gi|75240374, gi|... - gi|75240374|ref|ZP_00724314.1| COG0250: Transcription antiterminator [Escherichia coli F11], gi|1911...
gi|205335974, gi... - gi|205335974|gb|EDZ22738.1| transcription termination/antitermination factor NusG [Salmonella enteri...
NUSG_ECOL6 - Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / AT...
gi|29139428, gi|... - gi|29143793|ref|NP_807135.1| transcription antitermination protein NusG [Salmonella enterica subsp. ...
NUSG_SALTI - Transcription termination/antitermination protein NusG OS=Salmonella typhi GN=nusG PE=3 SV=2
NUSG_ECOL6 - Transcription antitermination protein nusG OS=Escherichia coli O6 GN=nusG PE=3 SV=2
NUSG_SALTY - Transcription termination/antitermination protein NusG OS=Salmonella typhimurium (strain LT2 / SGSC1...
NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2
gi|156935821, gi... - gi|156935821|ref|YP_001439737.1| transcription antitermination protein NusG [Enterobacter sakazakii ...
gi|152972839, gi... - gi|152972839|ref|YP_001337985.1| transcription antitermination protein NusG [Klebsiella pneumoniae s...
gi|16762305 - gi|16762305|ref|NP_457922.1| transcription antitermination protein NusG [Salmonella enterica subsp. ...
gi|205354449, gi... - gi|205354449|ref|YP_002228250.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|199605771, gi... - gi|200388673|ref|ZP_03215285.1| transcription termination/antitermination factor NusG [Salmonella en...
gi|213022866 - gi|213022866|ref|ZP_03337313.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|207859326, gi... - gi|207859326|ref|YP_002245977.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|91212813, gi|... - gi|91212813|ref|YP_542799.1| transcription antitermination protein NusG [Escherichia coli UTI89], gi...
gi|213417733 - gi|213417733|ref|ZP_03350853.1| transcription antitermination protein NusG [Salmonella enterica subs...
lcl|NC_016856.1_... - [gene=nusG] [protein=transcription antitermination protein NusG] [protein_id=YP_005240427.1] [locati...
gi|110345909, gi... - gi|110644317|ref|YP_672047.1| transcription antitermination protein NusG [Escherichia coli 536], gi|...
gi|213163867 - gi|213163867|ref|ZP_03349577.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|213585780 - gi|213585780|ref|ZP_03367606.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|213425733 - gi|213425733|ref|ZP_03358483.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|170770133, gi... - gi|170770133|ref|ZP_02904586.1| transcription termination/antitermination factor NusG [Escherichia a...
gi|168467920, gi... - gi|195629016|gb|EDX48408.1| transcription termination/antitermination factor NusG [Salmonella enteri...
gi|194405932, gi... - gi|194447628|ref|YP_002048135.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|117626246, gi... - gi|117626246|ref|YP_859569.1| transcription antitermination protein NusG [Escherichia coli APEC O1],...
gi|194442714, gi... - gi|194442714|ref|YP_002043400.1| transcription termination/antitermination factor NusG [Salmonella e...
gi|194710918, gi... - gi|194735416|ref|YP_002117051.1| transcription termination/antitermination factor NusG [Salmonella e...
gi|194456260, gi... - gi|194469896|ref|ZP_03075880.1| transcription termination/antitermination factor NusG [Salmonella en...
gi|198241913, gi... - gi|198241913|ref|YP_002218065.1| transcription termination/antitermination factor NusG [Salmonella e...
gi|197249353, gi... - gi|197249353|ref|YP_002149059.1| transcription termination/antitermination factor NusG [Salmonella e...
gi|227837563, gi... - gi|227885489|ref|ZP_04003294.1| transcription antitermination protein NusG [Escherichia coli 83972],...
gi|237702749, gi... - gi|237702749|ref|ZP_04533230.1| transcription antitermination protein nusG [Escherichia sp. 3_2_53FA...
gi|238892452, gi... - gi|238892452|ref|YP_002917186.1| transcription antitermination protein [Klebsiella pneumoniae NTUH-K...
gi|238913727 - gi|238913727|ref|ZP_04657564.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|213650883 - gi|213650883|ref|ZP_03380936.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|213623116 - gi|213623116|ref|ZP_03375899.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|214001616 - gi|214001616|ref|ZP_03412351.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|213852740 - gi|213852740|ref|ZP_03382272.1| transcription antitermination protein NusG [Salmonella enterica subs...
gi|218561048, gi... - gi|218561048|ref|YP_002393961.1| transcription antitermination protein NusG [Escherichia coli S88], ...
gi|215489314, gi... - gi|215489314|ref|YP_002331745.1| transcription antitermination protein NusG [Escherichia coli O127:H...
gi|224585690, gi... - gi|224585690|ref|YP_002639489.1| transcription antitermination protein NusG [Salmonella enterica sub...
gi|218692263, gi... - gi|218692263|ref|YP_002400475.1| transcription antitermination protein NusG [Escherichia coli ED1a],...
234.0 [0..1] [181..1]
gi|238717476, gi... - gi|77960657|ref|ZP_00824519.1| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...
234.0 [0..1] [181..1]
gi|238713530, gi... - gi|77957017|ref|ZP_00821086.1| COG0250: Transcription antiterminator [Yersinia bercovieri ATCC 43970...
233.0 [0..1] [181..1]
gi|56130232, gi|... - gi|56415975|ref|YP_153050.1| transcription antitermination protein NusG [Salmonella enterica subsp. ...
gi|197364902, gi... - gi|197364902|ref|YP_002144539.1| transcription antitermination protein NusG [Salmonella enterica sub...
233.0 [0..1] [181..1]
gi|229686981, gi... - gi|229899996|ref|ZP_04515136.1| transcription termination factor [Yersinia pestis biovar Orientalis ...
gi|238752784, gi... - gi|238752784|ref|ZP_04614252.1| Transcription antitermination protein nusG [Yersinia rohdei ATCC 433...
gi|238760251, gi... - gi|238760251|ref|ZP_04621395.1| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35...
gi|165928331, gi... - gi|165928331|ref|ZP_02224163.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|166214413, gi... - gi|166214413|ref|ZP_02240448.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|166012043, gi... - gi|166012043|ref|ZP_02232941.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|238794964, gi... - gi|77977799|ref|ZP_00833239.1| COG0250: Transcription antiterminator [Yersinia intermedia ATCC 29909...
gi|238790611, gi... - gi|77972254|ref|ZP_00827826.1| COG0250: Transcription antiterminator [Yersinia frederiksenii ATCC 33...
gi|77635956, gi|... - gi|77635956|ref|ZP_00798035.1| COG0250: Transcription antiterminator [Yersinia pestis Angola], gi|16...
gi|77631229, gi|... - gi|77631229|ref|ZP_00793815.1| COG0250: Transcription antiterminator [Yersinia pseudotuberculosis IP...
Q66FQ7|Q66FQ7_YERPS - Transcription antitermination protein nusG - Yersinia pseudotuberculosis
gi|108781528, gi... - gi|108809615|ref|YP_653531.1| transcription antitermination protein NusG [Yersinia pestis Antiqua], ...
gi|166957158, gi... - gi|167422947|ref|ZP_02314700.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|108810380, gi... - gi|229900555|ref|ZP_04515681.1| transcription termination factor [Yersinia pestis Nepal516], gi|2296...
gi|167048191, gi... - gi|167402411|ref|ZP_02307871.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|21957175, gi|... - gi|22124394|ref|NP_667817.1| transcription antitermination protein NusG [Yersinia pestis KIM], gi|21...
gi|153997214, gi... - gi|153997214|ref|ZP_02022321.1| transcription antitermination protein [Yersinia pestis CA88-4125], g...
gi|170022592, gi... - gi|170022592|ref|YP_001719097.1| transcription antitermination protein NusG [Yersinia pseudotubercul...
NUSG_YERPE - Transcription termination/antitermination protein NusG OS=Yersinia pestis GN=nusG PE=3 SV=3
gi|145212689, gi... - gi|145600993|ref|YP_001165069.1| transcription antitermination protein NusG [Yersinia pestis Pestoid...
gi|167426816, gi... - gi|167426816|ref|ZP_02318569.1| transcription termination/antitermination factor NusG [Yersinia pest...
gi|51587915, gi|... - gi|51594633|ref|YP_068824.1| transcription antitermination protein NusG [Yersinia pseudotuberculosis...
gi|45442869, gi|... - gi|45442869|ref|NP_994408.1| transcription antitermination protein NusG [Yersinia pestis biovar Micr...
gi|186893634, gi... - gi|186893634|ref|YP_001870746.1| transcription antitermination protein NusG [Yersinia pseudotubercul...
gi|218930757, gi... - gi|218930757|ref|YP_002348632.1| transcription antitermination protein NusG [Yersinia pestis CO92], ...
gi|165913811, gi... - gi|89103179|ref|ZP_01175768.1| COG0250: Transcription antiterminator [Yersinia pestis biovar Orienta...
gi|122087631, gi... - gi|123440670|ref|YP_001004663.1| transcription antitermination protein NusG [Yersinia enterocolitica...
gi|229837498, gi... - gi|229837498|ref|ZP_04457660.1| transcription termination factor [Yersinia pestis Pestoides A], gi|2...
gi|229695800, gi... - gi|229839434|ref|ZP_04459593.1| transcription termination factor [Yersinia pestis biovar Orientalis ...
233.0 [0..1] [181..1]
tr|I0QLY7|I0QLY7... - Transcription termination/antitermination protein nusG OS=Serratia sp. M24T3 GN=nusG PE=3 SV=1
gi|84778627, gi|... - gi|85058107|ref|YP_453809.1| transcription antitermination protein NusG [Sodalis glossinidius str. '...
233.0 [0..1] [181..1]
gi|50119178, gi|... - gi|50119178|ref|YP_048345.1| transcription antitermination protein NusG [Pectobacterium atrosepticum...
gi|227115002 - gi|227115002|ref|ZP_03828658.1| transcription antitermination protein NusG [Pectobacterium carotovor...
gi|255056656, gi... - gi|255056656|ref|ZP_05308864.1| NusG antitermination factor [Pectobacterium wasabiae WPP163], gi|254...
gi|227328359 - gi|227328359|ref|ZP_03832383.1| transcription antitermination protein NusG [Pectobacterium carotovor...
gi|251753184, gi... - gi|253686606|ref|YP_003015796.1| NusG antitermination factor [Pectobacterium carotovorum subsp. caro...
232.0 [0..1] [181..1]
NUSG_VIBCH - Transcription termination/antitermination protein NusG OS=Vibrio cholerae serotype O1 (strain ATCC 3...
gi|227012179, gi... - gi|75828308|ref|ZP_00757743.1| COG0250: Transcription antiterminator [Vibrio cholerae O395], gi|2271...
NUSG_VIBCH - Transcription antitermination protein nusG OS=Vibrio cholerae GN=nusG PE=3 SV=3
gi|153827148, gi... - gi|153827148|ref|ZP_01979815.1| transcription antitermination protein NusG [Vibrio cholerae MZO-2], ...
gi|254851632, gi... - gi|254851632|ref|ZP_05240982.1| transcription antitermination protein NusG [Vibrio cholerae MO10], g...
gi|197750379, gi... - gi|254292282|ref|ZP_04963028.1| transcription antitermination protein NusG [Vibrio cholerae AM-19226...
gi|229369051, gi... - gi|229606396|ref|YP_002877044.1| transcription antitermination protein NusG [Vibrio cholerae MJ-1236...
gi|229335539, gi... - gi|229527016|ref|ZP_04416412.1| transcription antitermination protein NusG [Vibrio cholerae 12129(1)...
gi|229343102, gi... - gi|229519861|ref|ZP_04409294.1| transcription antitermination protein NusG [Vibrio cholerae TM 11079...
gi|229516069, gi... - gi|229516069|ref|ZP_04405520.1| transcription antitermination protein NusG [Vibrio cholerae RC9], gi...
gi|229508687, gi... - gi|229508687|ref|ZP_04398181.1| transcription antitermination protein NusG [Vibrio cholerae B33], gi...
gi|229355987, gi... - gi|229506882|ref|ZP_04396390.1| transcription antitermination protein NusG [Vibrio cholerae BX 33028...
gi|227080535, gi... - gi|227080535|ref|YP_002809086.1| transcription antitermination protein NusG [Vibrio cholerae M66-2],...
gi|121592079, gi... - gi|121592079|ref|ZP_01679061.1| transcription antitermination protein NusG [Vibrio cholerae 2740-80]...
gi|124117117, gi... - gi|153226871|ref|ZP_01954953.1| transcription antitermination protein NusG [Vibrio cholerae MAK 757]...
231.0 [0..1] [180..1]
gi|54310503, gi|... - gi|54310503|ref|YP_131523.1| transcription antitermination protein NusG [Photobacterium profundum SS...
231.0 [0..1] [180..1]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAPKKRWY VVQAFSGFEG RVATSLREHI KLHNMEDLFG EVMVPTEEVV EIRGGQRRKS  60
   61 ERKFFPGYVL VQMVMNDASW HLVRSVPRVM GFIGGTSDRP APISDKEVDA IMNRLQQVGD 120
  121 KPRPKTLFEP GEMVRVNDGP FADFNGVVEE VDYEKSRLKV SVSIFGRATP VELDFSQVEK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1m1gA
Description: N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription termination factor activity 7.3828495299519 bayes_pls_golite062009
transcription regulator activity 3.63525538465601 bayes_pls_golite062009
structural constituent of ribosome 2.40236111142017 bayes_pls_golite062009
structural molecule activity 2.11748533169546 bayes_pls_golite062009
nucleic acid binding 0.761013355804059 bayes_pls_golite062009
binding 0.302568764609847 bayes_pls_golite062009
DNA binding 0.302556727687398 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle