YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226838472, gi...
Organism:	Escherichia sp. 1_1_43
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226838472, gi....

Description	E-value	Query Range	Subject Range
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	235.0	[0..1]	[181..1]
gi\|161505371, gi... - gi\|161505371\|ref\|YP_001572483.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|167554342, gi... - gi\|205321448\|gb\|EDZ09287.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|161617284, gi... - gi\|161617284\|ref\|YP_001591249.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|168239843, gi... - gi\|197287542\|gb\|EDY26935.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTI - Transcription antitermination protein nusG OS=Salmonella typhi GN=nusG PE=3 SV=2 gi\|167995347, gi... - gi\|205326985\|gb\|EDZ13749.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|62182602, gi\|... - gi\|62182602\|ref\|YP_219019.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205346818, gi... - gi\|205346818\|gb\|EDZ33449.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|75240374, gi\|... - gi\|75240374\|ref\|ZP_00724314.1\| COG0250: Transcription antiterminator [Escherichia coli F11], gi\|1911... gi\|205335974, gi... - gi\|205335974\|gb\|EDZ22738.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_ECOL6 - Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / AT... gi\|29139428, gi\|... - gi\|29143793\|ref\|NP_807135.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... NUSG_SALTI - Transcription termination/antitermination protein NusG OS=Salmonella typhi GN=nusG PE=3 SV=2 NUSG_ECOL6 - Transcription antitermination protein nusG OS=Escherichia coli O6 GN=nusG PE=3 SV=2 NUSG_SALTY - Transcription termination/antitermination protein NusG OS=Salmonella typhimurium (strain LT2 / SGSC1... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|156935821, gi... - gi\|156935821\|ref\|YP_001439737.1\| transcription antitermination protein NusG [Enterobacter sakazakii ... gi\|152972839, gi... - gi\|152972839\|ref\|YP_001337985.1\| transcription antitermination protein NusG [Klebsiella pneumoniae s... gi\|16762305 - gi\|16762305\|ref\|NP_457922.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205354449, gi... - gi\|205354449\|ref\|YP_002228250.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|199605771, gi... - gi\|200388673\|ref\|ZP_03215285.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|213022866 - gi\|213022866\|ref\|ZP_03337313.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|207859326, gi... - gi\|207859326\|ref\|YP_002245977.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|91212813, gi\|... - gi\|91212813\|ref\|YP_542799.1\| transcription antitermination protein NusG [Escherichia coli UTI89], gi... gi\|213417733 - gi\|213417733\|ref\|ZP_03350853.1\| transcription antitermination protein NusG [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=nusG] [protein=transcription antitermination protein NusG] [protein_id=YP_005240427.1] [locati... gi\|110345909, gi... - gi\|110644317\|ref\|YP_672047.1\| transcription antitermination protein NusG [Escherichia coli 536], gi\|... gi\|213163867 - gi\|213163867\|ref\|ZP_03349577.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213585780 - gi\|213585780\|ref\|ZP_03367606.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213425733 - gi\|213425733\|ref\|ZP_03358483.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|170770133, gi... - gi\|170770133\|ref\|ZP_02904586.1\| transcription termination/antitermination factor NusG [Escherichia a... gi\|168467920, gi... - gi\|195629016\|gb\|EDX48408.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|194405932, gi... - gi\|194447628\|ref\|YP_002048135.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|117626246, gi... - gi\|117626246\|ref\|YP_859569.1\| transcription antitermination protein NusG [Escherichia coli APEC O1],... gi\|194442714, gi... - gi\|194442714\|ref\|YP_002043400.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194710918, gi... - gi\|194735416\|ref\|YP_002117051.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194456260, gi... - gi\|194469896\|ref\|ZP_03075880.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|198241913, gi... - gi\|198241913\|ref\|YP_002218065.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|197249353, gi... - gi\|197249353\|ref\|YP_002149059.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|227837563, gi... - gi\|227885489\|ref\|ZP_04003294.1\| transcription antitermination protein NusG [Escherichia coli 83972],... gi\|237702749, gi... - gi\|237702749\|ref\|ZP_04533230.1\| transcription antitermination protein nusG [Escherichia sp. 3_2_53FA... gi\|238892452, gi... - gi\|238892452\|ref\|YP_002917186.1\| transcription antitermination protein [Klebsiella pneumoniae NTUH-K... gi\|238913727 - gi\|238913727\|ref\|ZP_04657564.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213650883 - gi\|213650883\|ref\|ZP_03380936.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213623116 - gi\|213623116\|ref\|ZP_03375899.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|214001616 - gi\|214001616\|ref\|ZP_03412351.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213852740 - gi\|213852740\|ref\|ZP_03382272.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|218561048, gi... - gi\|218561048\|ref\|YP_002393961.1\| transcription antitermination protein NusG [Escherichia coli S88], ... gi\|215489314, gi... - gi\|215489314\|ref\|YP_002331745.1\| transcription antitermination protein NusG [Escherichia coli O127:H... gi\|224585690, gi... - gi\|224585690\|ref\|YP_002639489.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|218692263, gi... - gi\|218692263\|ref\|YP_002400475.1\| transcription antitermination protein NusG [Escherichia coli ED1a],...	234.0	[0..1]	[181..1]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	234.0	[0..1]	[181..1]
gi\|238713530, gi... - gi\|77957017\|ref\|ZP_00821086.1\| COG0250: Transcription antiterminator [Yersinia bercovieri ATCC 43970...	233.0	[0..1]	[181..1]
gi\|56130232, gi\|... - gi\|56415975\|ref\|YP_153050.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|197364902, gi... - gi\|197364902\|ref\|YP_002144539.1\| transcription antitermination protein NusG [Salmonella enterica sub...	233.0	[0..1]	[181..1]
gi\|229686981, gi... - gi\|229899996\|ref\|ZP_04515136.1\| transcription termination factor [Yersinia pestis biovar Orientalis ... gi\|238752784, gi... - gi\|238752784\|ref\|ZP_04614252.1\| Transcription antitermination protein nusG [Yersinia rohdei ATCC 433... gi\|238760251, gi... - gi\|238760251\|ref\|ZP_04621395.1\| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35... gi\|165928331, gi... - gi\|165928331\|ref\|ZP_02224163.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166214413, gi... - gi\|166214413\|ref\|ZP_02240448.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166012043, gi... - gi\|166012043\|ref\|ZP_02232941.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|238794964, gi... - gi\|77977799\|ref\|ZP_00833239.1\| COG0250: Transcription antiterminator [Yersinia intermedia ATCC 29909... gi\|238790611, gi... - gi\|77972254\|ref\|ZP_00827826.1\| COG0250: Transcription antiterminator [Yersinia frederiksenii ATCC 33... gi\|77635956, gi\|... - gi\|77635956\|ref\|ZP_00798035.1\| COG0250: Transcription antiterminator [Yersinia pestis Angola], gi\|16... gi\|77631229, gi\|... - gi\|77631229\|ref\|ZP_00793815.1\| COG0250: Transcription antiterminator [Yersinia pseudotuberculosis IP... Q66FQ7\|Q66FQ7_YERPS - Transcription antitermination protein nusG - Yersinia pseudotuberculosis gi\|108781528, gi... - gi\|108809615\|ref\|YP_653531.1\| transcription antitermination protein NusG [Yersinia pestis Antiqua], ... gi\|166957158, gi... - gi\|167422947\|ref\|ZP_02314700.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|108810380, gi... - gi\|229900555\|ref\|ZP_04515681.1\| transcription termination factor [Yersinia pestis Nepal516], gi\|2296... gi\|167048191, gi... - gi\|167402411\|ref\|ZP_02307871.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|21957175, gi\|... - gi\|22124394\|ref\|NP_667817.1\| transcription antitermination protein NusG [Yersinia pestis KIM], gi\|21... gi\|153997214, gi... - gi\|153997214\|ref\|ZP_02022321.1\| transcription antitermination protein [Yersinia pestis CA88-4125], g... gi\|170022592, gi... - gi\|170022592\|ref\|YP_001719097.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... NUSG_YERPE - Transcription termination/antitermination protein NusG OS=Yersinia pestis GN=nusG PE=3 SV=3 gi\|145212689, gi... - gi\|145600993\|ref\|YP_001165069.1\| transcription antitermination protein NusG [Yersinia pestis Pestoid... gi\|167426816, gi... - gi\|167426816\|ref\|ZP_02318569.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|51587915, gi\|... - gi\|51594633\|ref\|YP_068824.1\| transcription antitermination protein NusG [Yersinia pseudotuberculosis... gi\|45442869, gi\|... - gi\|45442869\|ref\|NP_994408.1\| transcription antitermination protein NusG [Yersinia pestis biovar Micr... gi\|186893634, gi... - gi\|186893634\|ref\|YP_001870746.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... gi\|218930757, gi... - gi\|218930757\|ref\|YP_002348632.1\| transcription antitermination protein NusG [Yersinia pestis CO92], ... gi\|165913811, gi... - gi\|89103179\|ref\|ZP_01175768.1\| COG0250: Transcription antiterminator [Yersinia pestis biovar Orienta... gi\|122087631, gi... - gi\|123440670\|ref\|YP_001004663.1\| transcription antitermination protein NusG [Yersinia enterocolitica... gi\|229837498, gi... - gi\|229837498\|ref\|ZP_04457660.1\| transcription termination factor [Yersinia pestis Pestoides A], gi\|2... gi\|229695800, gi... - gi\|229839434\|ref\|ZP_04459593.1\| transcription termination factor [Yersinia pestis biovar Orientalis ...	233.0	[0..1]	[181..1]
tr\|I0QLY7\|I0QLY7... - Transcription termination/antitermination protein nusG OS=Serratia sp. M24T3 GN=nusG PE=3 SV=1 gi\|84778627, gi\|... - gi\|85058107\|ref\|YP_453809.1\| transcription antitermination protein NusG [Sodalis glossinidius str. '...	233.0	[0..1]	[181..1]
gi\|50119178, gi\|... - gi\|50119178\|ref\|YP_048345.1\| transcription antitermination protein NusG [Pectobacterium atrosepticum... gi\|227115002 - gi\|227115002\|ref\|ZP_03828658.1\| transcription antitermination protein NusG [Pectobacterium carotovor... gi\|255056656, gi... - gi\|255056656\|ref\|ZP_05308864.1\| NusG antitermination factor [Pectobacterium wasabiae WPP163], gi\|254... gi\|227328359 - gi\|227328359\|ref\|ZP_03832383.1\| transcription antitermination protein NusG [Pectobacterium carotovor... gi\|251753184, gi... - gi\|253686606\|ref\|YP_003015796.1\| NusG antitermination factor [Pectobacterium carotovorum subsp. caro...	232.0	[0..1]	[181..1]
NUSG_VIBCH - Transcription termination/antitermination protein NusG OS=Vibrio cholerae serotype O1 (strain ATCC 3... gi\|227012179, gi... - gi\|75828308\|ref\|ZP_00757743.1\| COG0250: Transcription antiterminator [Vibrio cholerae O395], gi\|2271... NUSG_VIBCH - Transcription antitermination protein nusG OS=Vibrio cholerae GN=nusG PE=3 SV=3 gi\|153827148, gi... - gi\|153827148\|ref\|ZP_01979815.1\| transcription antitermination protein NusG [Vibrio cholerae MZO-2], ... gi\|254851632, gi... - gi\|254851632\|ref\|ZP_05240982.1\| transcription antitermination protein NusG [Vibrio cholerae MO10], g... gi\|197750379, gi... - gi\|254292282\|ref\|ZP_04963028.1\| transcription antitermination protein NusG [Vibrio cholerae AM-19226... gi\|229369051, gi... - gi\|229606396\|ref\|YP_002877044.1\| transcription antitermination protein NusG [Vibrio cholerae MJ-1236... gi\|229335539, gi... - gi\|229527016\|ref\|ZP_04416412.1\| transcription antitermination protein NusG [Vibrio cholerae 12129(1)... gi\|229343102, gi... - gi\|229519861\|ref\|ZP_04409294.1\| transcription antitermination protein NusG [Vibrio cholerae TM 11079... gi\|229516069, gi... - gi\|229516069\|ref\|ZP_04405520.1\| transcription antitermination protein NusG [Vibrio cholerae RC9], gi... gi\|229508687, gi... - gi\|229508687\|ref\|ZP_04398181.1\| transcription antitermination protein NusG [Vibrio cholerae B33], gi... gi\|229355987, gi... - gi\|229506882\|ref\|ZP_04396390.1\| transcription antitermination protein NusG [Vibrio cholerae BX 33028... gi\|227080535, gi... - gi\|227080535\|ref\|YP_002809086.1\| transcription antitermination protein NusG [Vibrio cholerae M66-2],... gi\|121592079, gi... - gi\|121592079\|ref\|ZP_01679061.1\| transcription antitermination protein NusG [Vibrio cholerae 2740-80]... gi\|124117117, gi... - gi\|153226871\|ref\|ZP_01954953.1\| transcription antitermination protein NusG [Vibrio cholerae MAK 757]...	231.0	[0..1]	[180..1]
gi\|54310503, gi\|... - gi\|54310503\|ref\|YP_131523.1\| transcription antitermination protein NusG [Photobacterium profundum SS...	231.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAPKKRWY VVQAFSGFEG RVATSLREHI KLHNMEDLFG EVMVPTEEVV EIRGGQRRKS  60
   61 ERKFFPGYVL VQMVMNDASW HLVRSVPRVM GFIGGTSDRP APISDKEVDA IMNRLQQVGD 120
  121 KPRPKTLFEP GEMVRVNDGP FADFNGVVEE VDYEKSRLKV SVSIFGRATP VELDFSQVEK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: