YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254735157
Organism:	Bacillus anthracis str. Western North America USA6153
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254735157.

Description	E-value	Query Range	Subject Range
RSMG_BACC4 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain B4264) GN=rsmG PE=3 SV=1 RSMG_BACCR - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM... gi\|228817057, gi... - gi\|228942631\|ref\|ZP_04105163.1\| Methyltransferase GidB [Bacillus thuringiensis serovar berliner ATCC... gi\|228905426, gi... - gi\|228905426\|ref\|ZP_04069381.1\| Methyltransferase GidB [Bacillus thuringiensis IBL 4222], gi\|2288542... gi\|228961746, gi... - gi\|228961746\|ref\|ZP_04123349.1\| Methyltransferase GidB [Bacillus thuringiensis serovar pakistani str... gi\|228955732, gi... - gi\|228955732\|ref\|ZP_04117727.1\| Methyltransferase GidB [Bacillus thuringiensis serovar kurstaki str.... gi\|228784171, gi... - gi\|228975561\|ref\|ZP_04136113.1\| Methyltransferase GidB [Bacillus thuringiensis serovar thuringiensis... gi\|228968634, gi... - gi\|228968634\|ref\|ZP_04129617.1\| Methyltransferase GidB [Bacillus thuringiensis serovar sotto str. T0... gi\|229020707, gi... - gi\|229020707\|ref\|ZP_04177434.1\| Methyltransferase GidB [Bacillus cereus AH1273], gi\|228740602\|gb\|EEL... gi\|228982197, gi... - gi\|228982197\|ref\|ZP_04142486.1\| Methyltransferase GidB [Bacillus thuringiensis Bt407], gi\|228777549\|... gi\|228722214, gi... - gi\|229051151\|ref\|ZP_04194695.1\| Methyltransferase GidB [Bacillus cereus AH676], gi\|228722214\|gb\|EEL7... gi\|229026923, gi... - gi\|229026923\|ref\|ZP_04183246.1\| Methyltransferase GidB [Bacillus cereus AH1272], gi\|228734381\|gb\|EEL... gi\|74491027, gi\|... - gi\|75761488\|ref\|ZP_00741452.1\| Methyltransferase gidB [Bacillus thuringiensis serovar israelensis AT... gi\|228683524, gi... - gi\|229099909\|ref\|ZP_04230832.1\| Methyltransferase GidB [Bacillus cereus Rock3-29], gi\|228683524\|gb\|E... gi\|228710193, gi... - gi\|229072947\|ref\|ZP_04206143.1\| Methyltransferase GidB [Bacillus cereus F65185], gi\|228710193\|gb\|EEL... RSMG_BACC2 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain G9842) GN=rsmG PE=3 SV=1 gi\|229118972, gi... - gi\|229118972\|ref\|ZP_04248317.1\| Methyltransferase GidB [Bacillus cereus Rock1-3], gi\|228664497\|gb\|EE... gi\|228670574, gi... - gi\|229112895\|ref\|ZP_04242426.1\| Methyltransferase GidB [Bacillus cereus Rock1-15], gi\|228670574\|gb\|E... gi\|229148032, gi... - gi\|229148032\|ref\|ZP_04276371.1\| Methyltransferase GidB [Bacillus cereus BDRD-ST24], gi\|228635457\|gb\|... gi\|228652745, gi... - gi\|229130728\|ref\|ZP_04259681.1\| Methyltransferase GidB [Bacillus cereus BDRD-Cer4], gi\|228652745\|gb\|... gi\|228601761, gi... - gi\|229181728\|ref\|ZP_04309051.1\| Methyltransferase GidB [Bacillus cereus 172560W], gi\|228601761\|gb\|EE...	1.0E-49	[1..239]	[1..239]
RSMG_BACCZ - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / E33L) GN=rsmG PE=3 S...	2.0E-49	[1..239]	[1..239]
gi\|47093263, gi\|... - gi\|47093263\|ref\|ZP_00231034.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 4b ...	7.0E-49	[1..238]	[1..238]
gi\|89100945, gi\|... - gi\|89100945\|ref\|ZP_01173792.1\| glucose-inhibited division protein B [Bacillus sp. NRRL B-14911], gi\|...	8.0E-49	[1..238]	[1..238]
RSMG_ENTFA - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis (strain ATCC 700802 / V583)... RSMG_ENTFA, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis GN=rsmG PE=3 SV=1, Methyltr...	2.0E-48	[1..238]	[1..238]
RSMG_LISMF - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain F2365)...	2.0E-48	[1..238]	[1..238]
gi\|153184298, gi... - gi\|254899740\|ref\|ZP_05259664.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J0161], gi\|1... gi\|254913057, gi... - gi\|254913057\|ref\|ZP_05263069.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J2818], gi\|1... gi\|133731501, gi... - gi\|254937438\|ref\|ZP_05269135.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes F6900], gi\|1... GIDB_LISMO, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes GN=rsmG PE=3 SV=1, Methylt... gi\|224502785 - gi\|224502785\|ref\|ZP_03671092.1\| glucose-inhibited division protein B [Listeria monocytogenes FSL R2-... gi\|47095609, gi\|... - gi\|47095609\|ref\|ZP_00233217.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 1/2... RSMG_LISMO - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serovar 1/2a (strain ATCC ... gi\|255028091 - gi\|255028091\|ref\|ZP_05300042.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes LO28]	2.0E-48	[1..238]	[1..238]
RSMG_EXIS2 - Ribosomal RNA small subunit methyltransferase G OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM...	3.0E-48	[1..237]	[1..237]
gi\|56554498 - gi\|56554498\|pdb\|1XDZ\|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis Glucose Inhibit...	3.0E-48	[1..238]	[2..239]
gi\|221316408 - gi\|221316408\|ref\|ZP_03598213.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti... gi\|221321321 - gi\|221321321\|ref\|ZP_03602615.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti... RSMG_BACSU, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis GN=rsmG PE=1 SV=1, Methyltransf... RSMG_BACSU - Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis (strain 168) GN=rsmG PE=1 SV=1 gi\|221325604 - gi\|221325604\|ref\|ZP_03606898.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti...	4.0E-48	[1..238]	[1..238]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIEQFQSML EEKGITLSSR QLEQFEIYFE TLVEWNEKMN LTAITEKEEV YLKHFFDSIT  60
   61 AAFYYDFSKP FSICDVGAGA GFPSIPLKIC FPHLKVTIVD SLQKRINFLN HLAQKLELSD 120
  121 VAFCHDRAET FGKKEGVREA YDIVMARAVA RLSVLSELCL PLVKVGGTFI AMKGAAANEE 180
  181 IENGKYALEV LGGDLKEMST FQLPFEESER NILLIEKKRK TPKKYPRKPG TPNKLPIEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: