Protein: | RCD1_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 589 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCD1_ARATH.
Description | E-value | Query Range |
Subject Range |
|
664.0 | [0..1] | [589..1] |
|
462.0 | [0..1] | [569..1] |
Region A: Residues: [1-118] |
1 11 21 31 41 51 | | | | | | 1 MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE 60 61 GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW NDLPEHVICA IQNELEEK |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.419 | N/A | N/A | d.95.2 | Homing endonucleases |
View | Download | 0.361 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
View | Download | 0.345 | N/A | N/A | d.37.1 | CBS-domain |
View | Download | 0.337 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.337 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.311 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.306 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
View | Download | 0.306 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
View | Download | 0.259 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.256 | N/A | N/A | d.62.1 | Pepsin inhibitor-3 |
Region A: Residues: [119-465] |
1 11 21 31 41 51 | | | | | | 1 SAAIEFKLCG HSFILDFLHM QRLDMETGAK TPLAWIDNAG KCFFPEIYES DERTNYCHHK 60 61 CVEDPKQNAP HDIKLRLEID VNGGETPRLN LEECSDESGD NMMDDVPLAQ RSSNEHYDEA 120 121 TEDSCSRKLE AAVSKWDETD AIVVSGAKLT GSEVLDKDAV KKMFAVGTAS LGHVPVLDVG 180 181 RFSSEIAEAR LALFQKQVEI TKKHRGDANV RYAWLPAKRE VLSAVMMQGL GVGGAFIRKS 240 241 IYGVGIHLTA ADCPYFSARY CDVDENGVRY MVLCRVIMGN MELLRGDKAQ FFSGGEEYDN 300 301 GVDDIESPKN YIVWNINMNT HIFPEFVVRF KLSNLPNAEG NLIAKRD |
Detection Method: | |
Confidence: | 56.154902 |
Match: | 1a26A |
Description: | THE CATALYTIC FRAGMENT OF POLY(ADP-RIBOSE) POLYMERASE COMPLEXED WITH CARBA-NAD |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [466-589] |
1 11 21 31 41 51 | | | | | | 1 NSGVTLEGPK DLPPQLESNQ GARGSGSANS VGSSTTRPKS PWMPFPTLFA AISHKVAEND 60 61 MLLINADYQQ LRDKKMTRAE FVRKLRVIVG DDLLRSTITT LQNQPKSKEI PGSIRDHEEG 120 121 AGGL |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.582 | N/A | N/A | a.188.1 | Description not found. |
View | Download | 0.582 | N/A | N/A | a.188.1 | Description not found. |
View | Download | 0.484 | N/A | N/A | a.280.1 | Description not found. |
View | Download | 0.424 | N/A | N/A | a.188.1 | Description not found. |
View | Download | 0.390 | N/A | N/A | a.226.1 | Description not found. |
View | Download | 0.375 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
View | Download | 0.240 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |