YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18398425, gi\|...
Organism:	Arabidopsis thaliana
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18398425, gi|....

Description	E-value	Query Range	Subject Range
gi\|6478916 - gi\|6478916\|gb\|AAF14021.1\|AC011436_5 unknown protein [Arabidopsis thaliana]	294.0	[0..2]	[333..1]
gi\|54027090, gi\|... - gi\|54027090\|ref\|YP_121332.1\| transcription antitermination protein NusG [Nocardia farcinica IFM 1015...	237.0	[0..20]	[330..1]
gi\|125546265 - gi\|125546265\|gb\|EAY92404.1\| hypothetical protein OsI_14139 [Oryza sativa Indica Group] gi\|108711840, gi... - gi\|34897364\|ref\|NP_910028.1\| putative transcription factor [Oryza sativa], gi\|15042831\|gb\|AAK82454.1...	214.0	[0..30]	[330..34]
gi\|215402414 - gi\|215402414\|ref\|ZP_03414595.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|194543022, gi... - gi\|81255499\|ref\|ZP_00879975.1\| COG0250: Transcription antiterminator [Mycobacterium tuberculosis C],... gi\|119700503, gi... - gi\|76785663\|ref\|ZP_00772828.1\| COG0250: Transcription antiterminator [Mycobacterium tuberculosis F11... gi\|148660413, gi... - gi\|167969069\|ref\|ZP_02551346.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254363593, gi... - gi\|254363593\|ref\|ZP_04979639.1\| transcription antitermination protein nusG [Mycobacterium tuberculos... gi\|121636560, gi... - gi\|121636560\|ref\|YP_976783.1\| transcription antitermination protein NusG [Mycobacterium bovis BCG st... gi\|255098156 - gi\|255098156\|ref\|ZP_05327634.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254817182 - gi\|254817182\|ref\|ZP_05222183.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254549599 - gi\|254549599\|ref\|ZP_05140046.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|253797579, gi... - gi\|253797579\|ref\|YP_003030580.1\| transcription antitermination protein nusG [Mycobacterium tuberculo... gi\|215410186 - gi\|215410186\|ref\|ZP_03418994.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|215429474 - gi\|215429474\|ref\|ZP_03427393.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|215444758 - gi\|215444758\|ref\|ZP_03431510.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|218752287 - gi\|218752287\|ref\|ZP_03531083.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... NUSG_MYCTU - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis (strain ATCC 25... gi\|219556483 - gi\|219556483\|ref\|ZP_03535559.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... NUSG_MYCBO - Transcription antitermination protein nusG OS=Mycobacterium bovis GN=nusG PE=3 SV=1 NUSG_MYCBO - Transcription termination/antitermination protein NusG OS=Mycobacterium bovis (strain ATCC BAA-935 /... gi\|224989032, gi... - gi\|224989032\|ref\|YP_002643719.1\| transcription antitermination protein [Mycobacterium bovis BCG str.... NUSG_MYCTU - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis GN=nusG PE=1 SV... NUSG_MYCTO - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis (strain CDC 155...	208.0	[0..56]	[330..12]
gi\|89338459, gi\|... - gi\|89338459\|ref\|ZP_01191224.1\| transcription antitermination protein NusG:KOW [Mycobacterium flavesc...	207.0	[0..33]	[330..17]
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	207.0	[0..92]	[329..3]
gi\|161505371, gi... - gi\|161505371\|ref\|YP_001572483.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|167554342, gi... - gi\|205321448\|gb\|EDZ09287.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|161617284, gi... - gi\|161617284\|ref\|YP_001591249.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|168239843, gi... - gi\|197287542\|gb\|EDY26935.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTI - Transcription antitermination protein nusG OS=Salmonella typhi GN=nusG PE=3 SV=2 gi\|167995347, gi... - gi\|205326985\|gb\|EDZ13749.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|62182602, gi\|... - gi\|62182602\|ref\|YP_219019.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205346818, gi... - gi\|205346818\|gb\|EDZ33449.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|75240374, gi\|... - gi\|75240374\|ref\|ZP_00724314.1\| COG0250: Transcription antiterminator [Escherichia coli F11], gi\|1911... gi\|205335974, gi... - gi\|205335974\|gb\|EDZ22738.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_ECOL6 - Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / AT... gi\|29139428, gi\|... - gi\|29143793\|ref\|NP_807135.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... NUSG_SALTI - Transcription termination/antitermination protein NusG OS=Salmonella typhi GN=nusG PE=3 SV=2 NUSG_ECOL6 - Transcription antitermination protein nusG OS=Escherichia coli O6 GN=nusG PE=3 SV=2 NUSG_SALTY - Transcription termination/antitermination protein NusG OS=Salmonella typhimurium (strain LT2 / SGSC1... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|156935821, gi... - gi\|156935821\|ref\|YP_001439737.1\| transcription antitermination protein NusG [Enterobacter sakazakii ... gi\|152972839, gi... - gi\|152972839\|ref\|YP_001337985.1\| transcription antitermination protein NusG [Klebsiella pneumoniae s... gi\|16762305 - gi\|16762305\|ref\|NP_457922.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205354449, gi... - gi\|205354449\|ref\|YP_002228250.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|199605771, gi... - gi\|200388673\|ref\|ZP_03215285.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|213022866 - gi\|213022866\|ref\|ZP_03337313.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|207859326, gi... - gi\|207859326\|ref\|YP_002245977.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|91212813, gi\|... - gi\|91212813\|ref\|YP_542799.1\| transcription antitermination protein NusG [Escherichia coli UTI89], gi... gi\|213417733 - gi\|213417733\|ref\|ZP_03350853.1\| transcription antitermination protein NusG [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=nusG] [protein=transcription antitermination protein NusG] [protein_id=YP_005240427.1] [locati... gi\|110345909, gi... - gi\|110644317\|ref\|YP_672047.1\| transcription antitermination protein NusG [Escherichia coli 536], gi\|... gi\|213163867 - gi\|213163867\|ref\|ZP_03349577.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213585780 - gi\|213585780\|ref\|ZP_03367606.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213425733 - gi\|213425733\|ref\|ZP_03358483.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|170770133, gi... - gi\|170770133\|ref\|ZP_02904586.1\| transcription termination/antitermination factor NusG [Escherichia a... gi\|168467920, gi... - gi\|195629016\|gb\|EDX48408.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|194405932, gi... - gi\|194447628\|ref\|YP_002048135.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|117626246, gi... - gi\|117626246\|ref\|YP_859569.1\| transcription antitermination protein NusG [Escherichia coli APEC O1],... gi\|194442714, gi... - gi\|194442714\|ref\|YP_002043400.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194710918, gi... - gi\|194735416\|ref\|YP_002117051.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194456260, gi... - gi\|194469896\|ref\|ZP_03075880.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|198241913, gi... - gi\|198241913\|ref\|YP_002218065.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|197249353, gi... - gi\|197249353\|ref\|YP_002149059.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|227837563, gi... - gi\|227885489\|ref\|ZP_04003294.1\| transcription antitermination protein NusG [Escherichia coli 83972],... gi\|237702749, gi... - gi\|237702749\|ref\|ZP_04533230.1\| transcription antitermination protein nusG [Escherichia sp. 3_2_53FA... gi\|238892452, gi... - gi\|238892452\|ref\|YP_002917186.1\| transcription antitermination protein [Klebsiella pneumoniae NTUH-K... gi\|238913727 - gi\|238913727\|ref\|ZP_04657564.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213650883 - gi\|213650883\|ref\|ZP_03380936.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213623116 - gi\|213623116\|ref\|ZP_03375899.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|214001616 - gi\|214001616\|ref\|ZP_03412351.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213852740 - gi\|213852740\|ref\|ZP_03382272.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|218561048, gi... - gi\|218561048\|ref\|YP_002393961.1\| transcription antitermination protein NusG [Escherichia coli S88], ... gi\|215489314, gi... - gi\|215489314\|ref\|YP_002331745.1\| transcription antitermination protein NusG [Escherichia coli O127:H... gi\|224585690, gi... - gi\|224585690\|ref\|YP_002639489.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|218692263, gi... - gi\|218692263\|ref\|YP_002400475.1\| transcription antitermination protein NusG [Escherichia coli ED1a],...	205.0	[0..92]	[329..3]
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	204.0	[0..93]	[329..4]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	204.0	[0..92]	[329..3]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKLQGGLLQ WSRSSLIPSI YTPINKTQFS IAACVIERNH QLTAKERRQL RNERRESKLG  60
   61 YSWREEVEEK LIKKPKKRYA TWTEELNLDT LAESG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.710	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.510	a.85.1	Hemocyanin, N-terminal domain
View	Download	0.461	a.59.1	PAH2 domain
View	Download	0.400	a.217.1	Description not found.
View	Download	0.381	a.22.1	Histone-fold
View	Download	0.353	a.22.1	Histone-fold
View	Download	0.327	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.325	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.309	a.74.1	Cyclin-like
View	Download	0.304	a.74.1	Cyclin-like
View	Download	0.258	a.231.1	Description not found.
View	Download	0.205	a.240.1	Description not found.
View	Download	0.201	d.37.1	CBS-domain

Predicted Domain #2

Region A:
Residues: [96-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQWWAVRVSR LRGHETAQIL ARALARQFPE MEFTVYAPSV QVKRKLKNGS ISVKPKPVFP  60
   61 GCIFIRCILN KEIHDSIRDV DGVGGFIGSK VGNTKRQINK PRPVDDSDLE AIFKQAKEAQ 120
  121 EKADSEFEEA DRAEEEASIL ASQELLALSN SDVIETVAES KPKRAPRKAT LATETKAKKK 180
  181 KLAAGSTVRV LSGTFAEFVG NLKKLNRKTA KATVGFTLFG KETLVEIDIN ELVPEIQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits