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View Structure Prediction Details

Protein: gi|22330899, gi|...
Organism: Arabidopsis thaliana
Length: 599 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22330899, gi|....

Description E-value Query
Range
Subject
Range
gi|6642647 - gi|6642647|gb|AAF20228.1|AC012395_15 unknown protein [Arabidopsis thaliana]
690.0 [0..1] [560..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEISDRLNP GITPEFDPKT MRSTKPGLKR LFITSSVLFS FLLGVPFLWK SVEIYRSPLP  60
   61 FHDIDSLSDQ LESTPLRFPC NFHAVFVGFR STDPDNLRSQ IQDGINQLTH QSSQCGSCDF 120
  121 SLSVTVQNRE DQCSDTLAHS STTCSYRCGV IKRNGFSVGL DDTVDESLND VFSGCSENSG 180
  181 KMYSVVVVNK ENANGGDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKAVVGKRRH AWIVGNGLEE RYGDIVARVS EIFVQVFMNG GREEDSIQGE FMPVGSDGKI  60
   61 VLSFSLLNSN PRDWVYDWDF QRIDEALLAP VTKALAPIAN ITVESQVLYH TPKSSFSSWD 120
  121 KKLQSYIFRT SDLPFFVNSN EWHLDTSAGA SGRSKILQFV VYIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [363-599]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKECPLLLQ LPNVEISKTN GFISPMWGGV IVWNPGNCDK DSESPSRNTI SLQDLEQIVE  60
   61 IFLGQFRQLF GFKSEAKYTT GLGTYKILTS ERGFTEWELD VLSRKHTCFN LHSCSTTLGS 120
  121 LSRLVRSLPR MIIKDEIGEQ VKYSLKAAKL AQSNASLGGY SSSASSSREA RSLAENAFFH 180
  181 PSIMSVSYFS YEHCFAVYSP FFLPVVGHVV LAAVREWKRY KQEKAKYLTW LTRKKTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle