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View Structure Prediction Details

Protein: gi|22330899, gi|...
Organism: Arabidopsis thaliana
Length: 599 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22330899, gi|....

Description E-value Query
Range
Subject
Range
gi|6642647 - gi|6642647|gb|AAF20228.1|AC012395_15 unknown protein [Arabidopsis thaliana]
690.0 [0..1] [560..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEISDRLNP GITPEFDPKT MRSTKPGLKR LFITSSVLFS FLLGVPFLWK SVEIYRSPLP  60
   61 FHDIDSLSDQ LESTPLRFPC NFHAVFVGFR STDPDNLRSQ IQDGINQLTH QSSQCGSCDF 120
  121 SLSVTVQNRE DQCSDTLAHS STTCSYRCGV IKRNGFSVGL DDTVDESLND VFSGCSENSG 180
  181 KMYSVVVVNK ENANGGDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKAVVGKRRH AWIVGNGLEE RYGDIVARVS EIFVQVFMNG GREEDSIQGE FMPVGSDGKI  60
   61 VLSFSLLNSN PRDWVYDWDF QRIDEALLAP VTKALAPIAN ITVESQVLYH TPKSSFSSWD 120
  121 KKLQSYIFRT SDLPFFVNSN EWHLDTSAGA SGRSKILQFV VYIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [363-599]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKECPLLLQ LPNVEISKTN GFISPMWGGV IVWNPGNCDK DSESPSRNTI SLQDLEQIVE  60
   61 IFLGQFRQLF GFKSEAKYTT GLGTYKILTS ERGFTEWELD VLSRKHTCFN LHSCSTTLGS 120
  121 LSRLVRSLPR MIIKDEIGEQ VKYSLKAAKL AQSNASLGGY SSSASSSREA RSLAENAFFH 180
  181 PSIMSVSYFS YEHCFAVYSP FFLPVVGHVV LAAVREWKRY KQEKAKYLTW LTRKKTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle