YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18410975, gi|...
Organism: Arabidopsis thaliana
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410975, gi|....

Description E-value Query
Range
Subject
Range
gi|11282335, gi|... - gi|6735369|emb|CAB68190.1| putative protein [Arabidopsis thaliana], pir||T45672 hypothetical protein...
484.0 [0..25] [418..1]

Back

Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVKSQSFLF SVSKLFHQHQ QWRGMGAMTK VRLKWVKNKN LDHVIDTETD LKAACILKDA  60
   61 IKRSPTGFLT AKSVADWQKL LGLTVPVLRF LRRYPTLFHE FPHARYASLP CFKLTDTALM 120
  121 LDSQEEIIHQ SHEADTVERL CRVLMMMRSK TVSLRSLHSL KFDLGLPDNY EKTLVMKYPD 180
  181 HFCFVKASNG NPCLKLVKWR DEFAFSALQK RNEDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [216-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSGEESRYR EFKRGQSTLT FPMSFPRGYG AQKKVKAWMD EFQKLPYISP YDDPSNIDPE  60
   61 SDLMEKRAVA VLHELLSLTI HKKTKRNYLR SMRAELNIPH KFTRLFTRYP GIFYLSLKCK 120
  121 TTTVILKEGY RRGKLVDPHP LTRLRDKFYH VMRTGFLYRA RGLGMVSKEE LLLDRPEDDL 180
  181 EEEGSEEEEI VEGSELEEDS EAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle